Hb_000236_240

Information

Type -
Description -
Location Contig236: 216650-223196
Sequence    

Annotation

kegg
ID rcu:RCOM_0523340
description Pre-mRNA-splicing factor cwc15, putative
nr
ID XP_002522799.1
description Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
swissprot
ID O45766
description Protein CWC15 homolog OS=Caenorhabditis elegans GN=T10C6.5 PE=3 SV=1
trembl
ID B9S9Y0
description Pre-mRNA-splicing factor cwc15, putative OS=Ricinus communis GN=RCOM_0523340 PE=4 SV=1
Gene Ontology
ID GO:0005681
description protein cwc15 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24694: 216717-223129 , PASA_asmbl_24696: 221862-222037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_240 0.0 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
2 Hb_000260_100 0.0575933802 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001329_130 0.0655771937 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002997_080 0.0718873562 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_000883_020 0.076809275 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_000866_010 0.0770650825 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009421_020 0.0793914334 - - PREDICTED: caltractin-like [Jatropha curcas]
8 Hb_000649_070 0.0806544624 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
9 Hb_000753_240 0.0810692384 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
10 Hb_006960_050 0.0826594014 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
11 Hb_007007_060 0.0831597062 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
12 Hb_004109_280 0.0841159435 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
13 Hb_009646_030 0.0845629727 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005288_150 0.0847107392 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
15 Hb_002154_120 0.0850126533 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
16 Hb_004093_090 0.0857349322 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
17 Hb_000365_120 0.0858183277 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
18 Hb_006620_020 0.0860304551 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
19 Hb_000866_410 0.0861702513 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
20 Hb_009545_080 0.0870785421 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000236_240 Hb_000236_240 Hb_000260_100 Hb_000260_100 Hb_000236_240--Hb_000260_100 Hb_001329_130 Hb_001329_130 Hb_000236_240--Hb_001329_130 Hb_002997_080 Hb_002997_080 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_000260_100--Hb_002997_080 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_020367_050 Hb_020367_050 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_001329_130--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050 Hb_002997_080--Hb_000230_560 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_000230_560 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6881 19.7453 37.5861 21.7396 52.1257 30.9994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0551 37.2406 27.597 18.7549 29.4685

CAGE analysis