Hb_000236_250

Information

Type -
Description -
Location Contig236: 223440-227197
Sequence    

Annotation

kegg
ID rcu:RCOM_0523330
description hypothetical protein
nr
ID XP_002522798.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9H330
description Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2
trembl
ID B9S9X9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0523330 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 245

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24697: 223649-227084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001584_110 0.0864760688 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
3 Hb_014568_030 0.0867867809 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
4 Hb_005280_010 0.089740619 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
5 Hb_002890_340 0.0961310599 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
6 Hb_185467_020 0.0962338444 - - Cucumisin precursor, putative [Ricinus communis]
7 Hb_001017_040 0.0964852906 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
8 Hb_007558_140 0.0974438034 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
9 Hb_002874_070 0.0976557972 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
10 Hb_005754_060 0.1000284091 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011316_110 0.1008040817 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
12 Hb_004440_100 0.1015916 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
13 Hb_004046_010 0.1035848949 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
14 Hb_008453_150 0.1043544506 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
15 Hb_012760_170 0.1059724336 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
16 Hb_002307_100 0.1063375872 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
17 Hb_073171_110 0.1065791234 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
18 Hb_000049_070 0.1068312859 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
19 Hb_012055_020 0.1071971653 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
20 Hb_000078_130 0.1078554442 - - -

Gene co-expression network

sample Hb_000236_250 Hb_000236_250 Hb_001584_110 Hb_001584_110 Hb_000236_250--Hb_001584_110 Hb_014568_030 Hb_014568_030 Hb_000236_250--Hb_014568_030 Hb_005280_010 Hb_005280_010 Hb_000236_250--Hb_005280_010 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_185467_020 Hb_185467_020 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_014568_030--Hb_011282_030 Hb_049675_010 Hb_049675_010 Hb_005280_010--Hb_049675_010 Hb_071736_010 Hb_071736_010 Hb_005280_010--Hb_071736_010 Hb_000122_130 Hb_000122_130 Hb_005280_010--Hb_000122_130 Hb_011310_070 Hb_011310_070 Hb_005280_010--Hb_011310_070 Hb_000139_380 Hb_000139_380 Hb_005280_010--Hb_000139_380 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_008453_150 Hb_008453_150 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_000184_110 Hb_000184_110 Hb_001017_040--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_005662_030 Hb_005662_030 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_001017_040--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.8247 14.578 6.3493 20.3627 60.8212 82.2985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.6797 25.4212 72.1489 20.0098 20.7748

CAGE analysis