Hb_000236_280

Information

Type -
Description -
Location Contig236: 233056-236426
Sequence    

Annotation

kegg
ID rcu:RCOM_0523310
description hypothetical protein
nr
ID XP_012071071.1
description PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9JIG7
description Coiled-coil domain-containing protein 22 OS=Mus musculus GN=Ccdc22 PE=1 SV=1
trembl
ID A0A067KWH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24699: 233067-234807 , PASA_asmbl_24700: 233067-234569 , PASA_asmbl_24701: 234846-235598 , PASA_asmbl_24702: 235779-236457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_280 0.0 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
2 Hb_004241_070 0.0640634929 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
3 Hb_000104_080 0.0648361586 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
4 Hb_073171_080 0.067521816 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
5 Hb_000088_200 0.0682004634 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_004044_020 0.0708045335 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
7 Hb_004525_100 0.0754605926 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
8 Hb_003006_060 0.0789452709 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
9 Hb_004678_020 0.0792350407 - - PREDICTED: protein YIF1B [Jatropha curcas]
10 Hb_001474_030 0.0793148371 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_005237_060 0.0800467724 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
12 Hb_000923_040 0.0808926016 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
13 Hb_002942_220 0.0811025853 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
14 Hb_001663_110 0.0814112939 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000617_220 0.0822928301 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_012305_070 0.082890447 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000976_270 0.0853900427 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
18 Hb_001584_290 0.0858253626 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_023001_020 0.0863343619 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
20 Hb_023020_060 0.0866560628 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]

Gene co-expression network

sample Hb_000236_280 Hb_000236_280 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_002942_220 Hb_002942_220 Hb_004241_070--Hb_002942_220 Hb_000923_040 Hb_000923_040 Hb_004241_070--Hb_000923_040 Hb_004241_070--Hb_000104_080 Hb_002007_350 Hb_002007_350 Hb_004241_070--Hb_002007_350 Hb_012305_070 Hb_012305_070 Hb_004241_070--Hb_012305_070 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_000088_200--Hb_004044_020 Hb_000088_200--Hb_004525_100 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_004044_020--Hb_000684_420 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_004044_020--Hb_012305_070 Hb_004044_020--Hb_004525_100 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.676 11.5651 8.97547 6.36494 36.2748 27.6596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5549 14.0374 9.11107 6.35253 6.39257

CAGE analysis