Hb_000236_290

Information

Type -
Description -
Location Contig236: 237838-240663
Sequence    

Annotation

kegg
ID rcu:RCOM_0523300
description organic anion transporter, putative
nr
ID XP_002522795.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q8RXL8
description Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1
trembl
ID B9S9X6
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_0523300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized membrane protein at1g06890 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24703: 240520-240659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_290 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_019516_070 0.1099840863 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
3 Hb_003177_040 0.1122243008 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_000108_180 0.1272434222 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
5 Hb_008461_060 0.1275698641 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
6 Hb_005295_020 0.1291283017 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
7 Hb_001699_080 0.1309754356 - - unnamed protein product [Coffea canephora]
8 Hb_002759_030 0.1371610429 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
9 Hb_003097_160 0.1378394603 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
10 Hb_001225_050 0.1394778739 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
11 Hb_000813_070 0.139772581 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000302_320 0.140380638 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
13 Hb_001289_070 0.1407099704 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_009252_070 0.1413475147 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
15 Hb_000345_550 0.1429948414 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
16 Hb_000358_060 0.1430569456 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_001913_040 0.1440003499 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000820_110 0.1454079293 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
19 Hb_000270_380 0.1465967366 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_002081_020 0.1474355674 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000236_290 Hb_000236_290 Hb_019516_070 Hb_019516_070 Hb_000236_290--Hb_019516_070 Hb_003177_040 Hb_003177_040 Hb_000236_290--Hb_003177_040 Hb_000108_180 Hb_000108_180 Hb_000236_290--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_000236_290--Hb_008461_060 Hb_005295_020 Hb_005295_020 Hb_000236_290--Hb_005295_020 Hb_001699_080 Hb_001699_080 Hb_000236_290--Hb_001699_080 Hb_000820_110 Hb_000820_110 Hb_019516_070--Hb_000820_110 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_019516_070--Hb_001699_080 Hb_003177_040--Hb_000108_180 Hb_001001_070 Hb_001001_070 Hb_003177_040--Hb_001001_070 Hb_003177_040--Hb_008461_060 Hb_003177_040--Hb_001699_080 Hb_000251_120 Hb_000251_120 Hb_003177_040--Hb_000251_120 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_008461_060--Hb_001001_070 Hb_001512_130 Hb_001512_130 Hb_005295_020--Hb_001512_130 Hb_136408_040 Hb_136408_040 Hb_005295_020--Hb_136408_040 Hb_012484_050 Hb_012484_050 Hb_005295_020--Hb_012484_050 Hb_002062_010 Hb_002062_010 Hb_005295_020--Hb_002062_010 Hb_003152_020 Hb_003152_020 Hb_005295_020--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_005295_020--Hb_007163_110 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0860612 0.202878 0.743842 2.92439 0.0450799 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0281293 0.105191 0.0899803 1.81472

CAGE analysis