Hb_000236_300

Information

Type -
Description -
Location Contig236: 241312-242019
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16880g
description hypothetical protein
nr
ID XP_012091085.1
description PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
swissprot
ID A7RP64
description RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1
trembl
ID A0A067JG41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03542 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding protein pno1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_300 0.0 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
2 Hb_000209_090 0.0855900986 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_175612_010 0.0979479331 transcription factor TF Family: MBF1 orf [Ricinus communis]
4 Hb_004204_200 0.0981338304 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
5 Hb_007534_040 0.0989686159 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
6 Hb_005735_030 0.0995565749 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001754_170 0.1027671676 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_003605_070 0.1061303616 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
9 Hb_001623_580 0.1067629546 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
10 Hb_012193_010 0.1069361689 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000175_390 0.1102867188 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
12 Hb_004044_020 0.1111280868 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
13 Hb_001221_230 0.1139103536 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000186_280 0.1139825317 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_000976_270 0.1148833043 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
16 Hb_001016_060 0.1150268035 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000847_070 0.1162815693 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
18 Hb_003746_040 0.1173856465 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
19 Hb_119583_010 0.1182636541 - - 60S ribosomal protein L12A [Hevea brasiliensis]
20 Hb_000009_590 0.1184132978 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_300 Hb_000236_300 Hb_000209_090 Hb_000209_090 Hb_000236_300--Hb_000209_090 Hb_175612_010 Hb_175612_010 Hb_000236_300--Hb_175612_010 Hb_004204_200 Hb_004204_200 Hb_000236_300--Hb_004204_200 Hb_007534_040 Hb_007534_040 Hb_000236_300--Hb_007534_040 Hb_005735_030 Hb_005735_030 Hb_000236_300--Hb_005735_030 Hb_001754_170 Hb_001754_170 Hb_000236_300--Hb_001754_170 Hb_000976_270 Hb_000976_270 Hb_000209_090--Hb_000976_270 Hb_003605_070 Hb_003605_070 Hb_000209_090--Hb_003605_070 Hb_001741_140 Hb_001741_140 Hb_000209_090--Hb_001741_140 Hb_000209_090--Hb_007534_040 Hb_004044_020 Hb_004044_020 Hb_000209_090--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000209_090--Hb_004525_100 Hb_175612_010--Hb_007534_040 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_000175_390 Hb_000175_390 Hb_175612_010--Hb_000175_390 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_000749_150 Hb_000749_150 Hb_004204_200--Hb_000749_150 Hb_004204_200--Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_004204_200--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_004204_200--Hb_001221_230 Hb_000905_190 Hb_000905_190 Hb_004204_200--Hb_000905_190 Hb_000349_060 Hb_000349_060 Hb_004204_200--Hb_000349_060 Hb_000035_400 Hb_000035_400 Hb_007534_040--Hb_000035_400 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_007534_040--Hb_001754_170 Hb_024714_030 Hb_024714_030 Hb_005735_030--Hb_024714_030 Hb_119583_010 Hb_119583_010 Hb_005735_030--Hb_119583_010 Hb_000847_070 Hb_000847_070 Hb_005735_030--Hb_000847_070 Hb_066807_010 Hb_066807_010 Hb_005735_030--Hb_066807_010 Hb_000365_360 Hb_000365_360 Hb_005735_030--Hb_000365_360 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_001754_170--Hb_175612_010 Hb_000107_170 Hb_000107_170 Hb_001754_170--Hb_000107_170 Hb_001754_170--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.7972 22.969 9.35384 18.2633 77.4825 88.5659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7938 58.1628 19.9106 16.7279 5.82786

CAGE analysis