Hb_000236_320

Information

Type -
Description -
Location Contig236: 250332-253003
Sequence    

Annotation

kegg
ID rcu:RCOM_0523270
description Neighbor of COX4, putative
nr
ID XP_012071066.1
description PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
swissprot
ID Q9FG71
description ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1
trembl
ID A0A067KT59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01069 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24706: 250384-252952 , PASA_asmbl_24707: 251854-251974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_320 0.0 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
2 Hb_018663_020 0.0694636221 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
3 Hb_012305_070 0.0704061374 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005914_230 0.0704898702 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
5 Hb_003384_030 0.0724843432 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
6 Hb_003453_020 0.0740145103 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
7 Hb_004310_060 0.0747741121 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000236_370 0.0763441368 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
9 Hb_000645_150 0.0766403222 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000879_140 0.0777110746 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
11 Hb_023001_020 0.0810953371 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
12 Hb_002007_350 0.0813307427 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
13 Hb_171900_100 0.0820068466 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
14 Hb_000803_300 0.0830413137 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_000139_250 0.0835886053 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
16 Hb_143629_010 0.084517721 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_001226_180 0.085034425 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
18 Hb_008887_050 0.0851786561 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
19 Hb_025557_020 0.0852991152 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
20 Hb_000002_330 0.0862932214 - - PREDICTED: actin-related protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_320 Hb_000236_320 Hb_018663_020 Hb_018663_020 Hb_000236_320--Hb_018663_020 Hb_012305_070 Hb_012305_070 Hb_000236_320--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_000236_320--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_000236_320--Hb_003384_030 Hb_003453_020 Hb_003453_020 Hb_000236_320--Hb_003453_020 Hb_004310_060 Hb_004310_060 Hb_000236_320--Hb_004310_060 Hb_018663_020--Hb_005914_230 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_012305_070--Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_005914_230--Hb_004310_060 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_003384_030--Hb_001969_040 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_003453_020--Hb_012305_070 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_018663_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
205.063 72.7552 62.2239 32.2026 226.722 202.069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.182 88.2592 85.0893 88.7739 22.4616

CAGE analysis