Hb_000236_330

Information

Type -
Description -
Location Contig236: 254252-257176
Sequence    

Annotation

kegg
ID rcu:RCOM_0523130
description Oligopeptide transporter, putative
nr
ID XP_012071038.1
description PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FG72
description Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1
trembl
ID A0A067KSW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01053 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_330 0.0 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
2 Hb_001842_110 0.198231189 transcription factor TF Family: ERF CBF-like transcription factor, putative [Ricinus communis]
3 Hb_000890_180 0.2435365642 - - glutaredoxin, grx, putative [Ricinus communis]
4 Hb_000035_420 0.2635395039 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
5 Hb_012150_060 0.2771397631 - - -
6 Hb_002341_040 0.277996742 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_003867_030 0.2842335242 - - -
8 Hb_001008_160 0.2845676821 - - -
9 Hb_000538_170 0.2873142419 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
10 Hb_001814_100 0.2891419011 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
11 Hb_000856_410 0.2898258997 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_166155_010 0.2969238188 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_009393_060 0.2970926826 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
14 Hb_000345_110 0.3050471594 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
15 Hb_161045_010 0.307204753 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
16 Hb_002218_060 0.3089272747 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009403_010 0.3110743279 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
18 Hb_001511_270 0.3132591032 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
19 Hb_182750_010 0.3155786428 - - hypothetical protein MIMGU_mgv1a0001602mg, partial [Erythranthe guttata]
20 Hb_002890_350 0.316192483 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000236_330 Hb_000236_330 Hb_001842_110 Hb_001842_110 Hb_000236_330--Hb_001842_110 Hb_000890_180 Hb_000890_180 Hb_000236_330--Hb_000890_180 Hb_000035_420 Hb_000035_420 Hb_000236_330--Hb_000035_420 Hb_012150_060 Hb_012150_060 Hb_000236_330--Hb_012150_060 Hb_002341_040 Hb_002341_040 Hb_000236_330--Hb_002341_040 Hb_003867_030 Hb_003867_030 Hb_000236_330--Hb_003867_030 Hb_001842_110--Hb_000890_180 Hb_001842_110--Hb_012150_060 Hb_003540_220 Hb_003540_220 Hb_001842_110--Hb_003540_220 Hb_006501_140 Hb_006501_140 Hb_001842_110--Hb_006501_140 Hb_032718_010 Hb_032718_010 Hb_001842_110--Hb_032718_010 Hb_000890_180--Hb_032718_010 Hb_062447_010 Hb_062447_010 Hb_000890_180--Hb_062447_010 Hb_001123_250 Hb_001123_250 Hb_000890_180--Hb_001123_250 Hb_003159_150 Hb_003159_150 Hb_000890_180--Hb_003159_150 Hb_000245_270 Hb_000245_270 Hb_000035_420--Hb_000245_270 Hb_004143_050 Hb_004143_050 Hb_000035_420--Hb_004143_050 Hb_000506_130 Hb_000506_130 Hb_000035_420--Hb_000506_130 Hb_000172_080 Hb_000172_080 Hb_000035_420--Hb_000172_080 Hb_166155_010 Hb_166155_010 Hb_000035_420--Hb_166155_010 Hb_034953_010 Hb_034953_010 Hb_000035_420--Hb_034953_010 Hb_014879_010 Hb_014879_010 Hb_012150_060--Hb_014879_010 Hb_182750_010 Hb_182750_010 Hb_012150_060--Hb_182750_010 Hb_001206_010 Hb_001206_010 Hb_012150_060--Hb_001206_010 Hb_153258_020 Hb_153258_020 Hb_012150_060--Hb_153258_020 Hb_004945_050 Hb_004945_050 Hb_002341_040--Hb_004945_050 Hb_008550_030 Hb_008550_030 Hb_002341_040--Hb_008550_030 Hb_000060_100 Hb_000060_100 Hb_002341_040--Hb_000060_100 Hb_001677_120 Hb_001677_120 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002097_210 Hb_002097_210 Hb_002341_040--Hb_002097_210 Hb_002218_060 Hb_002218_060 Hb_003867_030--Hb_002218_060 Hb_002890_350 Hb_002890_350 Hb_003867_030--Hb_002890_350 Hb_091913_010 Hb_091913_010 Hb_003867_030--Hb_091913_010 Hb_006873_030 Hb_006873_030 Hb_003867_030--Hb_006873_030 Hb_006717_020 Hb_006717_020 Hb_003867_030--Hb_006717_020 Hb_010091_040 Hb_010091_040 Hb_003867_030--Hb_010091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125107 0.00672853 0.0247674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0292852 0 0.0326469

CAGE analysis