Hb_000236_360

Information

Type -
Description -
Location Contig236: 261092-263784
Sequence    

Annotation

kegg
ID pmum:103338993
description LRR receptor-like serine/threonine-protein kinase FLS2
nr
ID XP_008240493.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID V4VTZ9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024612mg PE=4 SV=1
Gene Ontology
ID GO:0044763
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_360 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
2 Hb_004109_300 0.0767961088 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
3 Hb_000380_040 0.0825718675 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_001157_150 0.0912747153 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
5 Hb_047163_010 0.1008322738 - - PREDICTED: periaxin-like [Populus euphratica]
6 Hb_125876_010 0.1008589697 - - unnamed protein product [Vitis vinifera]
7 Hb_181092_010 0.1030061538 - - unnamed protein product [Vitis vinifera]
8 Hb_156949_010 0.11116227 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_003074_070 0.1115070739 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_002204_030 0.1133851477 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_000334_250 0.1148836389 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_002743_030 0.1170865046 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
13 Hb_009083_080 0.1193063804 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005653_020 0.1194974671 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
15 Hb_002603_020 0.1260470999 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
16 Hb_001269_020 0.1261726908 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
17 Hb_009515_010 0.1263496003 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
18 Hb_005218_070 0.1274711052 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
19 Hb_000951_030 0.1282098198 - - kinase, putative [Ricinus communis]
20 Hb_000856_350 0.1300841895 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_360 Hb_000236_360 Hb_004109_300 Hb_004109_300 Hb_000236_360--Hb_004109_300 Hb_000380_040 Hb_000380_040 Hb_000236_360--Hb_000380_040 Hb_001157_150 Hb_001157_150 Hb_000236_360--Hb_001157_150 Hb_047163_010 Hb_047163_010 Hb_000236_360--Hb_047163_010 Hb_125876_010 Hb_125876_010 Hb_000236_360--Hb_125876_010 Hb_181092_010 Hb_181092_010 Hb_000236_360--Hb_181092_010 Hb_004109_300--Hb_125876_010 Hb_002743_030 Hb_002743_030 Hb_004109_300--Hb_002743_030 Hb_004109_300--Hb_047163_010 Hb_156949_010 Hb_156949_010 Hb_004109_300--Hb_156949_010 Hb_003074_070 Hb_003074_070 Hb_004109_300--Hb_003074_070 Hb_000380_040--Hb_001157_150 Hb_009083_080 Hb_009083_080 Hb_000380_040--Hb_009083_080 Hb_000380_040--Hb_181092_010 Hb_000185_060 Hb_000185_060 Hb_000380_040--Hb_000185_060 Hb_033006_040 Hb_033006_040 Hb_000380_040--Hb_033006_040 Hb_001157_150--Hb_009083_080 Hb_000077_470 Hb_000077_470 Hb_001157_150--Hb_000077_470 Hb_002003_020 Hb_002003_020 Hb_001157_150--Hb_002003_020 Hb_000334_250 Hb_000334_250 Hb_001157_150--Hb_000334_250 Hb_011628_030 Hb_011628_030 Hb_047163_010--Hb_011628_030 Hb_059162_010 Hb_059162_010 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_002743_030 Hb_004931_060 Hb_004931_060 Hb_047163_010--Hb_004931_060 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_125876_010--Hb_002743_030 Hb_125876_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_011628_030 Hb_000856_350 Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_181092_010--Hb_156949_010 Hb_002677_010 Hb_002677_010 Hb_181092_010--Hb_002677_010 Hb_002986_110 Hb_002986_110 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_000185_060 Hb_013654_010 Hb_013654_010 Hb_181092_010--Hb_013654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.115966 0 0.0183394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.200688 0

CAGE analysis