Hb_000236_370

Information

Type -
Description -
Location Contig236: 268447-274188
Sequence    

Annotation

kegg
ID rcu:RCOM_0523110
description DNA-directed RNA polymerase I/III subunits, putative
nr
ID XP_012071041.1
description PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
swissprot
ID Q32L22
description DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1
trembl
ID A0A067KWG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01055 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases i and iii subunit rpac1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24709: 269502-273758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_370 0.0 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
2 Hb_000645_150 0.0491247108 - - zinc finger protein, putative [Ricinus communis]
3 Hb_002097_090 0.0599345127 - - Splicing factor 3A subunit, putative [Ricinus communis]
4 Hb_028639_060 0.0600990016 - - transporter, putative [Ricinus communis]
5 Hb_012305_070 0.0663524135 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000956_030 0.067450002 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
7 Hb_000186_280 0.0692928237 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
8 Hb_009620_040 0.0703812761 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
9 Hb_006913_040 0.0734160554 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
10 Hb_000236_320 0.0763441368 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
11 Hb_001019_170 0.0769261111 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
12 Hb_000803_300 0.0774896222 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_000076_080 0.0785824809 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_001829_010 0.0810279214 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_000300_280 0.0812338703 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_000522_090 0.0817510911 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
17 Hb_000684_420 0.0820034728 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_000703_080 0.082364183 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
19 Hb_000322_050 0.0846028275 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_005245_130 0.0847757425 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_370 Hb_000236_370 Hb_000645_150 Hb_000645_150 Hb_000236_370--Hb_000645_150 Hb_002097_090 Hb_002097_090 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_000645_150--Hb_012305_070 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_012305_070--Hb_000684_420 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000186_280--Hb_000684_420 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000186_280--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4378 8.67481 4.69397 4.0902 17.914 23.204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9497 11.2446 8.56543 7.95346 2.44003

CAGE analysis