Hb_000236_380

Information

Type -
Description -
Location Contig236: 276803-282247
Sequence    

Annotation

kegg
ID pmum:103318750
description protein kinase G11A
nr
ID XP_012071042.1
description PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID A0A067L5D9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01056 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase d6pk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24710: 276998-282254 , PASA_asmbl_24714: 277206-277482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_380 0.0 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
2 Hb_002400_470 0.0715374979 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_008864_110 0.0730733493 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
4 Hb_002255_050 0.0790001887 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_001348_050 0.0813547148 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007592_030 0.0815312414 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_057878_010 0.0827419728 - - hypothetical protein VITISV_036304 [Vitis vinifera]
8 Hb_002078_020 0.0830312748 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
9 Hb_000645_120 0.0870963169 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
10 Hb_001047_030 0.0873870388 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
11 Hb_000197_210 0.0891983773 - - phosphatidylinositol transporter, putative [Ricinus communis]
12 Hb_000322_100 0.0904362285 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
13 Hb_011174_090 0.0916398447 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
14 Hb_000034_050 0.0949217414 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
15 Hb_000123_090 0.0955934734 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
16 Hb_014361_100 0.0964204909 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
17 Hb_003813_040 0.0972720852 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
18 Hb_004994_040 0.0973272189 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_006831_110 0.0974433191 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
20 Hb_000009_480 0.0982755673 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_380 Hb_000236_380 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_002400_470--Hb_008864_110 Hb_001047_030 Hb_001047_030 Hb_002400_470--Hb_001047_030 Hb_002400_470--Hb_057878_010 Hb_000123_090 Hb_000123_090 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_008864_110--Hb_000123_090 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_000283_070 Hb_000283_070 Hb_002255_050--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_002255_050--Hb_006831_110 Hb_022408_010 Hb_022408_010 Hb_002255_050--Hb_022408_010 Hb_002221_050 Hb_002221_050 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_002255_050--Hb_000645_120 Hb_000592_080 Hb_000592_080 Hb_001348_050--Hb_000592_080 Hb_014361_100 Hb_014361_100 Hb_001348_050--Hb_014361_100 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_000329_390 Hb_000329_390 Hb_001348_050--Hb_000329_390 Hb_001348_050--Hb_007592_030 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000442_150 Hb_000442_150 Hb_057878_010--Hb_000442_150 Hb_002671_140 Hb_002671_140 Hb_057878_010--Hb_002671_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6257 20.9306 22.5801 30.1293 48.6527 49.532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4706 14.0055 34.0653 18.2381 14.4627

CAGE analysis