Hb_000236_390

Information

Type -
Description -
Location Contig236: 284183-290271
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008306mg
description hypothetical protein
nr
ID XP_012071048.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
swissprot
ID F4J7S8
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis thaliana GN=SFH9 PE=2 SV=1
trembl
ID A0A067L481
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01057 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec14 cytosolic factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24715: 284587-290555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_390 0.0 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
2 Hb_000529_030 0.059236215 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001195_480 0.077892656 - - cop9 complex subunit, putative [Ricinus communis]
4 Hb_000633_020 0.0817236251 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
5 Hb_004453_170 0.0844463207 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
6 Hb_000622_180 0.0865565488 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
7 Hb_001016_150 0.0879207622 - - Rop1 [Hevea brasiliensis]
8 Hb_003185_110 0.0906406964 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
9 Hb_000193_110 0.0916577046 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
10 Hb_012565_070 0.0919238879 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_000260_550 0.0944177949 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
12 Hb_124953_020 0.0952133244 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
13 Hb_004096_090 0.0957936545 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_007423_040 0.0963222601 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
15 Hb_001476_080 0.096684359 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
16 Hb_005773_060 0.0969320403 - - defender against cell death, putative [Ricinus communis]
17 Hb_011512_070 0.097021836 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
18 Hb_000286_070 0.0970311928 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
19 Hb_000010_110 0.0978179523 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
20 Hb_001534_120 0.0979136433 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000236_390 Hb_000236_390 Hb_000529_030 Hb_000529_030 Hb_000236_390--Hb_000529_030 Hb_001195_480 Hb_001195_480 Hb_000236_390--Hb_001195_480 Hb_000633_020 Hb_000633_020 Hb_000236_390--Hb_000633_020 Hb_004453_170 Hb_004453_170 Hb_000236_390--Hb_004453_170 Hb_000622_180 Hb_000622_180 Hb_000236_390--Hb_000622_180 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150 Hb_000529_030--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_000633_020--Hb_004096_090 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_000193_110 Hb_000193_110 Hb_000622_180--Hb_000193_110 Hb_029388_020 Hb_029388_020 Hb_000622_180--Hb_029388_020 Hb_000622_180--Hb_001195_480 Hb_021068_040 Hb_021068_040 Hb_000622_180--Hb_021068_040 Hb_002685_040 Hb_002685_040 Hb_000622_180--Hb_002685_040 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001863_430 Hb_001863_430 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.66446 7.53274 12.6988 8.60197 8.02021 7.61025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1185 21.35 5.63991 5.17758 5.21766

CAGE analysis