Hb_000236_410

Information

Type -
Description -
Location Contig236: 297294-301895
Sequence    

Annotation

kegg
ID rcu:RCOM_0522870
description Paramyosin, putative
nr
ID XP_002522782.1
description Paramyosin, putative [Ricinus communis]
swissprot
ID Q9LVQ4
description WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=1 SV=1
trembl
ID B9S9W3
description Paramyosin, putative OS=Ricinus communis GN=RCOM_0522870 PE=4 SV=1
Gene Ontology
ID GO:0005886
description web family protein at5g55860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24720: 297109-301756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_410 0.0 - - Paramyosin, putative [Ricinus communis]
2 Hb_032808_030 0.0667945032 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_144744_010 0.0702363618 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_093084_070 0.0706420103 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
5 Hb_010712_090 0.0708738934 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
6 Hb_001055_030 0.074970592 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
7 Hb_001935_140 0.0798590051 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
8 Hb_000236_220 0.0832466082 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_004586_290 0.0834635299 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_000373_100 0.084183157 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
11 Hb_000487_380 0.0861084922 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
12 Hb_002046_020 0.0863111667 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_000862_040 0.0884780607 - - ara4-interacting protein, putative [Ricinus communis]
14 Hb_007894_130 0.0887289083 - - hypothetical protein RCOM_0584960 [Ricinus communis]
15 Hb_003373_040 0.0891119412 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
16 Hb_005389_160 0.0892870581 - - PREDICTED: casein kinase I [Jatropha curcas]
17 Hb_002006_040 0.0896464872 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
18 Hb_000069_410 0.0896791469 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_000105_040 0.0896875194 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
20 Hb_000402_230 0.0901966849 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_410 Hb_000236_410 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_002662_020 Hb_002662_020 Hb_032808_030--Hb_002662_020 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_000236_220 Hb_000236_220 Hb_093084_070--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_093084_070--Hb_003373_040 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_001033_050 Hb_001033_050 Hb_010712_090--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_010712_090--Hb_008253_020 Hb_002284_170 Hb_002284_170 Hb_010712_090--Hb_002284_170 Hb_008103_060 Hb_008103_060 Hb_010712_090--Hb_008103_060 Hb_000862_040 Hb_000862_040 Hb_010712_090--Hb_000862_040 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_001935_140--Hb_000105_040 Hb_001541_250 Hb_001541_250 Hb_001935_140--Hb_001541_250 Hb_007054_040 Hb_007054_040 Hb_001935_140--Hb_007054_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4434 44.6626 9.90447 19.7432 19.6103 19.2661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4538 13.3482 13.5096 21.813 11.8544

CAGE analysis