Hb_000236_450

Information

Type -
Description -
Location Contig236: 350977-358493
Sequence    

Annotation

kegg
ID rcu:RCOM_0522630
description coated vesicle membrane protein, putative (EC:2.4.1.12)
nr
ID XP_002522778.1
description coated vesicle membrane protein, putative [Ricinus communis]
swissprot
ID Q0DXZ1
description Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1
trembl
ID B9S9V9
description Coated vesicle membrane protein, putative OS=Ricinus communis GN=RCOM_0522630 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein e6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24725: 350998-354134 , PASA_asmbl_24726: 354829-358400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_450 0.0 - - coated vesicle membrane protein, putative [Ricinus communis]
2 Hb_011616_020 0.1679554304 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
3 Hb_008123_010 0.1746258179 - - -
4 Hb_031658_040 0.177542993 - - -
5 Hb_002518_120 0.1777265955 - - hypothetical protein RCOM_0731250 [Ricinus communis]
6 Hb_003805_070 0.1819202837 - - PREDICTED: sacsin [Jatropha curcas]
7 Hb_002368_070 0.1879569429 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
8 Hb_006618_050 0.1904913783 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_015026_080 0.193165687 - - -
10 Hb_030131_030 0.1960062599 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
11 Hb_015978_050 0.1967868505 - - -
12 Hb_156279_010 0.2004834157 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
13 Hb_001623_280 0.2032393296 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
14 Hb_005250_030 0.2035664999 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
15 Hb_148593_010 0.2037057564 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
16 Hb_006452_240 0.2085911546 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
17 Hb_000010_290 0.2094234307 - - -
18 Hb_002631_250 0.2095671561 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
19 Hb_032258_010 0.2096898088 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
20 Hb_000815_170 0.2106874572 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_000236_450 Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070 Hb_005250_030 Hb_005250_030 Hb_011616_020--Hb_005250_030 Hb_005523_010 Hb_005523_010 Hb_011616_020--Hb_005523_010 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_003632_030 Hb_003632_030 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_090530_010 Hb_090530_010 Hb_008123_010--Hb_090530_010 Hb_008123_010--Hb_011616_020 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_006618_050 Hb_006618_050 Hb_031658_040--Hb_006618_050 Hb_031658_040--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_031658_040--Hb_065408_010 Hb_003506_050 Hb_003506_050 Hb_031658_040--Hb_003506_050 Hb_001366_160 Hb_001366_160 Hb_031658_040--Hb_001366_160 Hb_015026_080 Hb_015026_080 Hb_031658_040--Hb_015026_080 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_002518_120--Hb_015026_080 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_006452_240 Hb_006452_240 Hb_003805_070--Hb_006452_240 Hb_003805_070--Hb_005523_010 Hb_148593_010 Hb_148593_010 Hb_003805_070--Hb_148593_010 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_001912_080 Hb_001912_080 Hb_003805_070--Hb_001912_080 Hb_002368_070--Hb_006618_050 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.891 10.1664 3.74269 4.68954 29.2611 11.2697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67025 6.66178 9.10859 29.6909 67.0734

CAGE analysis