Hb_000237_020

Information

Type -
Description -
Location Contig237: 51294-57657
Sequence    

Annotation

kegg
ID rcu:RCOM_1449150
description DNA replication licensing factor MCM4, putative
nr
ID XP_012067200.1
description PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
swissprot
ID Q0WVF5
description DNA replication licensing factor MCM4 OS=Arabidopsis thaliana GN=MCM4 PE=1 SV=1
trembl
ID A0A067KZY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26759 PE=3 SV=1
Gene Ontology
ID GO:0042555
description dna replication licensing factor mcm4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24776: 51606-57666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_020 0.0 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
2 Hb_000307_220 0.1142700308 - - oxidoreductase family protein [Populus trichocarpa]
3 Hb_000581_030 0.1150700457 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000917_240 0.1346228587 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
5 Hb_003430_080 0.1354524862 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000940_210 0.1420298528 - - cyclophilin [Hevea brasiliensis]
7 Hb_019654_060 0.1427944313 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
8 Hb_000003_030 0.146381968 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000077_110 0.1475201538 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
10 Hb_005694_180 0.1504857169 - - PREDICTED: cytochrome b5 [Jatropha curcas]
11 Hb_000661_220 0.1514393757 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
12 Hb_004032_210 0.1562789354 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002681_120 0.156640601 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
14 Hb_172706_020 0.157486221 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_000235_050 0.1602833705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000309_030 0.1613093933 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
17 Hb_002518_090 0.1623680234 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
18 Hb_000803_120 0.1633145634 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
19 Hb_023226_030 0.1660714164 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
20 Hb_000740_090 0.1663017123 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000237_020 Hb_000237_020 Hb_000307_220 Hb_000307_220 Hb_000237_020--Hb_000307_220 Hb_000581_030 Hb_000581_030 Hb_000237_020--Hb_000581_030 Hb_000917_240 Hb_000917_240 Hb_000237_020--Hb_000917_240 Hb_003430_080 Hb_003430_080 Hb_000237_020--Hb_003430_080 Hb_000940_210 Hb_000940_210 Hb_000237_020--Hb_000940_210 Hb_019654_060 Hb_019654_060 Hb_000237_020--Hb_019654_060 Hb_000077_110 Hb_000077_110 Hb_000307_220--Hb_000077_110 Hb_000566_130 Hb_000566_130 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000307_220--Hb_000581_030 Hb_002518_090 Hb_002518_090 Hb_000307_220--Hb_002518_090 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_000581_030--Hb_019654_060 Hb_000581_030--Hb_000940_210 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_000917_240--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000917_240--Hb_001053_210 Hb_000917_240--Hb_000581_030 Hb_000917_240--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_000917_240--Hb_023226_030 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000940_210--Hb_003430_080 Hb_000940_210--Hb_001053_210 Hb_019654_060--Hb_000003_030 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.738658 1.3875 6.41697 8.08377 1.24186 1.44755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.953425 0.826552 0.16997 4.69852 1.46222

CAGE analysis