Hb_000237_050

Information

Type -
Description -
Location Contig237: 98004-100166
Sequence    

Annotation

kegg
ID rcu:RCOM_1449120
description cysteine protease, putative (EC:3.4.22.16)
nr
ID AIB06024.1
description CP2 [Hevea brasiliensis]
swissprot
ID P43295
description Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2
trembl
ID A0A060D9J0
description CP2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase rd19a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24779: 97944-100188
cDNA
(Sanger)
(ID:Location)		 042_B12.ab1: 98790-99903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_050 0.0 - - CP2 [Hevea brasiliensis]
2 Hb_103684_010 0.0678757454 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
3 Hb_004450_070 0.0712447423 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
4 Hb_019280_010 0.0731414261 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
5 Hb_003097_140 0.0762539411 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_027445_020 0.0770892747 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
7 Hb_001437_190 0.079127363 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000237_040 0.0813337597 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
9 Hb_000976_100 0.0834074937 - - eukaryotic translation elongation factor, putative [Ricinus communis]
10 Hb_012114_100 0.0836857137 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_001369_360 0.0840887556 - - embryo yellow protein, partial [Manihot esculenta]
12 Hb_001500_100 0.0863910048 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000085_450 0.0888607401 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
14 Hb_004677_050 0.0905144259 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
15 Hb_000890_070 0.0906018074 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
16 Hb_002874_110 0.0907983387 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_004019_120 0.0920714688 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_003544_050 0.0926085131 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
19 Hb_009296_080 0.0932675398 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
20 Hb_000152_700 0.0936974144 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_050 Hb_000237_050 Hb_103684_010 Hb_103684_010 Hb_000237_050--Hb_103684_010 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_000237_050--Hb_019280_010 Hb_003097_140 Hb_003097_140 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190 Hb_003544_050 Hb_003544_050 Hb_103684_010--Hb_003544_050 Hb_103684_010--Hb_019280_010 Hb_103684_010--Hb_003097_140 Hb_012114_100 Hb_012114_100 Hb_103684_010--Hb_012114_100 Hb_001369_360 Hb_001369_360 Hb_103684_010--Hb_001369_360 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_003097_140--Hb_027445_020 Hb_027445_020--Hb_001369_360 Hb_000237_040 Hb_000237_040 Hb_027445_020--Hb_000237_040 Hb_000976_100 Hb_000976_100 Hb_027445_020--Hb_000976_100 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_002284_250 Hb_002284_250 Hb_001437_190--Hb_002284_250 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_000062_020 Hb_000062_020 Hb_001437_190--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_001437_190--Hb_001821_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.286 97.2355 48.0113 181.328 57.171 71.4436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.6021 46.2854 66.4105 126.049 121.969

CAGE analysis