Hb_000237_080

Information

Type transcription factor
Description TF Family: PHD
Location Contig237: 114157-120836
Sequence    

Annotation

kegg
ID rcu:RCOM_1449090
description phd finger transcription factor, putative
nr
ID XP_012067206.1
description PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
swissprot
ID O75151
description Lysine-specific demethylase PHF2 OS=Homo sapiens GN=PHF2 PE=1 SV=4
trembl
ID A0A067KZZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26764 PE=4 SV=1
Gene Ontology
ID GO:0003682
description phd finger transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24780: 114183-120775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_080 0.0 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
2 Hb_001318_030 0.0870781902 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
3 Hb_004785_060 0.0971021924 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
4 Hb_009615_150 0.097898831 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
5 Hb_002813_050 0.1009658565 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
6 Hb_005147_090 0.1025928406 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
7 Hb_000859_060 0.1032407505 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
8 Hb_008959_030 0.1040717539 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_005306_130 0.1041153964 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_005396_050 0.1041154208 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
11 Hb_000926_330 0.1060955314 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_000059_210 0.1064790842 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001655_070 0.1065964525 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
14 Hb_000445_180 0.1075874715 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
15 Hb_000203_160 0.1098292683 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
16 Hb_004128_060 0.1100755321 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
17 Hb_002685_170 0.1103599547 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
18 Hb_000554_020 0.1110057732 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
19 Hb_012807_050 0.1115773222 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_002137_020 0.1116183903 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000237_080 Hb_000237_080 Hb_001318_030 Hb_001318_030 Hb_000237_080--Hb_001318_030 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_002813_050 Hb_002813_050 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_005928_110 Hb_005928_110 Hb_009615_150--Hb_005928_110 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_000621_080 Hb_000621_080 Hb_009615_150--Hb_000621_080 Hb_002813_050--Hb_000000_370 Hb_002813_050--Hb_000859_060 Hb_002813_050--Hb_004785_060 Hb_012395_220 Hb_012395_220 Hb_002813_050--Hb_012395_220 Hb_001141_390 Hb_001141_390 Hb_002813_050--Hb_001141_390 Hb_002813_050--Hb_012807_050 Hb_001123_230 Hb_001123_230 Hb_005147_090--Hb_001123_230 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_018790_060 Hb_018790_060 Hb_005147_090--Hb_018790_060 Hb_000297_200 Hb_000297_200 Hb_005147_090--Hb_000297_200 Hb_003750_080 Hb_003750_080 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340 Hb_000085_100 Hb_000085_100 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000859_060--Hb_000000_370 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_000859_060--Hb_004355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.6802 89.6274 10.7652 26.0483 65.8914 69.9433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.066 73.892 83.9903 44.5458 9.86959

CAGE analysis