Hb_000237_120

Information

Type -
Description -
Location Contig237: 146606-153049
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16690g
description POPTRDRAFT_831267; beta-galactosidase family protein
nr
ID XP_012067207.1
description PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
swissprot
ID Q9SCV9
description Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1
trembl
ID B9H0V1
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0004s16690g PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24784: 146884-149054 , PASA_asmbl_24785: 148586-151259 , PASA_asmbl_24786: 151264-151764 , PASA_asmbl_24787: 152007-152633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_120 0.0 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
2 Hb_181463_020 0.0843209333 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
3 Hb_006142_050 0.105785807 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
4 Hb_167211_010 0.1152979213 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
5 Hb_001109_170 0.1183189452 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
6 Hb_001622_020 0.1183779817 - - -
7 Hb_032143_010 0.1199882354 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_000054_130 0.1207596514 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
9 Hb_002635_010 0.1349712429 - - homogentisate phytyl transferase [Hevea brasiliensis]
10 Hb_060152_010 0.1350297107 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
11 Hb_004162_140 0.1357717034 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
12 Hb_124579_020 0.1364362426 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_007101_140 0.1384114706 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
14 Hb_010311_020 0.1395504659 - - lrr receptor protein kinase, putative [Ricinus communis]
15 Hb_000836_030 0.1459484852 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_005332_050 0.1467385725 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
17 Hb_010264_010 0.1481963084 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
18 Hb_001369_270 0.1488246753 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004607_160 0.1498372632 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
20 Hb_007850_110 0.1524026501 - - MADS-box transcription factor 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000237_120 Hb_000237_120 Hb_181463_020 Hb_181463_020 Hb_000237_120--Hb_181463_020 Hb_006142_050 Hb_006142_050 Hb_000237_120--Hb_006142_050 Hb_167211_010 Hb_167211_010 Hb_000237_120--Hb_167211_010 Hb_001109_170 Hb_001109_170 Hb_000237_120--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_000237_120--Hb_001622_020 Hb_032143_010 Hb_032143_010 Hb_000237_120--Hb_032143_010 Hb_000054_130 Hb_000054_130 Hb_181463_020--Hb_000054_130 Hb_181463_020--Hb_001109_170 Hb_181463_020--Hb_001622_020 Hb_181463_020--Hb_032143_010 Hb_181463_020--Hb_167211_010 Hb_006142_050--Hb_032143_010 Hb_007101_140 Hb_007101_140 Hb_006142_050--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_006142_050--Hb_010264_010 Hb_000621_030 Hb_000621_030 Hb_006142_050--Hb_000621_030 Hb_004162_140 Hb_004162_140 Hb_006142_050--Hb_004162_140 Hb_167211_010--Hb_000054_130 Hb_001778_040 Hb_001778_040 Hb_167211_010--Hb_001778_040 Hb_167211_010--Hb_001109_170 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050 Hb_110737_010 Hb_110737_010 Hb_001109_170--Hb_110737_010 Hb_010311_020 Hb_010311_020 Hb_001109_170--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_001109_170--Hb_000416_010 Hb_001109_170--Hb_124579_020 Hb_001109_170--Hb_000054_130 Hb_001622_020--Hb_000054_130 Hb_001622_020--Hb_001778_040 Hb_000254_060 Hb_000254_060 Hb_001622_020--Hb_000254_060 Hb_060152_010 Hb_060152_010 Hb_001622_020--Hb_060152_010 Hb_168319_060 Hb_168319_060 Hb_001622_020--Hb_168319_060 Hb_032143_010--Hb_010264_010 Hb_000265_030 Hb_000265_030 Hb_032143_010--Hb_000265_030 Hb_001104_220 Hb_001104_220 Hb_032143_010--Hb_001104_220 Hb_005622_040 Hb_005622_040 Hb_032143_010--Hb_005622_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666378 0.313038 1.81788 3.41909 0.0350662 0.0344081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.05491 5.50455

CAGE analysis