Hb_000237_140

Information

Type -
Description -
Location Contig237: 156396-166658
Sequence    

Annotation

kegg
ID rcu:RCOM_1448870
description RNA-binding protein, putative
nr
ID XP_012067208.1
description PREDICTED: RNA-binding protein 28 [Jatropha curcas]
swissprot
ID Q8CGC6
description RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
trembl
ID A0A067L3I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26766 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_140 0.0 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
2 Hb_000291_090 0.0958810163 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
3 Hb_000692_150 0.1010497829 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
4 Hb_001054_030 0.1066352596 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
5 Hb_007186_020 0.1085293128 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
6 Hb_000009_500 0.1150222965 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
7 Hb_000352_070 0.1195397786 - - Potassium transporter, putative [Ricinus communis]
8 Hb_010712_090 0.1234286934 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
9 Hb_068575_010 0.1237202364 - - PREDICTED: protein GAMETE EXPRESSED 2 [Jatropha curcas]
10 Hb_079326_020 0.1244275028 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011849_040 0.1246933119 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000479_240 0.1251682217 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
13 Hb_000101_350 0.125208245 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
14 Hb_010021_030 0.1261226147 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
15 Hb_004228_100 0.1276270892 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_001277_300 0.1276631262 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
17 Hb_001033_050 0.1278703999 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
18 Hb_008253_020 0.1297550131 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_008226_090 0.1303589582 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
20 Hb_000331_330 0.130504015 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_140 Hb_000237_140 Hb_000291_090 Hb_000291_090 Hb_000237_140--Hb_000291_090 Hb_000692_150 Hb_000692_150 Hb_000237_140--Hb_000692_150 Hb_001054_030 Hb_001054_030 Hb_000237_140--Hb_001054_030 Hb_007186_020 Hb_007186_020 Hb_000237_140--Hb_007186_020 Hb_000009_500 Hb_000009_500 Hb_000237_140--Hb_000009_500 Hb_000352_070 Hb_000352_070 Hb_000237_140--Hb_000352_070 Hb_000291_090--Hb_001054_030 Hb_000453_060 Hb_000453_060 Hb_000291_090--Hb_000453_060 Hb_032808_030 Hb_032808_030 Hb_000291_090--Hb_032808_030 Hb_000291_090--Hb_000009_500 Hb_002006_040 Hb_002006_040 Hb_000291_090--Hb_002006_040 Hb_002960_080 Hb_002960_080 Hb_000291_090--Hb_002960_080 Hb_009252_050 Hb_009252_050 Hb_000692_150--Hb_009252_050 Hb_008226_090 Hb_008226_090 Hb_000692_150--Hb_008226_090 Hb_005946_210 Hb_005946_210 Hb_000692_150--Hb_005946_210 Hb_134362_010 Hb_134362_010 Hb_000692_150--Hb_134362_010 Hb_004109_230 Hb_004109_230 Hb_000692_150--Hb_004109_230 Hb_044486_020 Hb_044486_020 Hb_000692_150--Hb_044486_020 Hb_000260_640 Hb_000260_640 Hb_001054_030--Hb_000260_640 Hb_002253_080 Hb_002253_080 Hb_001054_030--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_001054_030--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_001054_030--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001054_030--Hb_000321_150 Hb_010021_030 Hb_010021_030 Hb_007186_020--Hb_010021_030 Hb_001860_040 Hb_001860_040 Hb_007186_020--Hb_001860_040 Hb_011202_020 Hb_011202_020 Hb_007186_020--Hb_011202_020 Hb_000680_110 Hb_000680_110 Hb_007186_020--Hb_000680_110 Hb_007426_130 Hb_007426_130 Hb_007186_020--Hb_007426_130 Hb_007186_020--Hb_000291_090 Hb_011849_040 Hb_011849_040 Hb_000009_500--Hb_011849_040 Hb_000402_230 Hb_000402_230 Hb_000009_500--Hb_000402_230 Hb_079326_020 Hb_079326_020 Hb_000009_500--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_000009_500--Hb_002026_210 Hb_000009_500--Hb_004109_230 Hb_000614_210 Hb_000614_210 Hb_000009_500--Hb_000614_210 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_004429_010 Hb_004429_010 Hb_000352_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184472 0.0913685 0.0360419 0.068418 0.0622434 0.0755644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209529 0.0329736 0.0313186 0.0327757 0.0349089

CAGE analysis