Hb_000237_200

Information

Type -
Description -
Location Contig237: 273329-281873
Sequence    

Annotation

kegg
ID rcu:RCOM_1448820
description ubiquitin-activating enzyme E1b, putative
nr
ID XP_012067212.1
description PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
swissprot
ID Q9SJT1
description SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1
trembl
ID A0A067L025
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26770 PE=4 SV=1
Gene Ontology
ID GO:0005524
description sumo-activating enzyme subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24799: 279177-281787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_200 0.0 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
2 Hb_021374_030 0.0667435258 - - hypothetical protein RCOM_0351490 [Ricinus communis]
3 Hb_000035_090 0.0731214717 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
4 Hb_000300_470 0.0745376323 - - PREDICTED: nucleolin-like [Jatropha curcas]
5 Hb_002876_300 0.075061918 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
6 Hb_114310_070 0.075933774 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
7 Hb_002774_190 0.0766852527 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
8 Hb_000061_180 0.0776349468 - - exonuclease, putative [Ricinus communis]
9 Hb_000599_270 0.0833972388 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
10 Hb_012150_030 0.0859397593 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_003053_110 0.0862432035 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
12 Hb_000375_390 0.0869743488 - - poly-A binding protein, putative [Ricinus communis]
13 Hb_004096_240 0.0883202649 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
14 Hb_006913_020 0.0891380144 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
15 Hb_073973_090 0.0903827838 - - Aminotransferase ybdL, putative [Ricinus communis]
16 Hb_000941_100 0.0903973258 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
17 Hb_013405_080 0.0916058909 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
18 Hb_000108_020 0.0919094399 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
19 Hb_002173_070 0.0921168467 - - MRG family protein isoform 2 [Theobroma cacao]
20 Hb_033312_010 0.0924053148 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_200 Hb_000237_200 Hb_021374_030 Hb_021374_030 Hb_000237_200--Hb_021374_030 Hb_000035_090 Hb_000035_090 Hb_000237_200--Hb_000035_090 Hb_000300_470 Hb_000300_470 Hb_000237_200--Hb_000300_470 Hb_002876_300 Hb_002876_300 Hb_000237_200--Hb_002876_300 Hb_114310_070 Hb_114310_070 Hb_000237_200--Hb_114310_070 Hb_002774_190 Hb_002774_190 Hb_000237_200--Hb_002774_190 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_000035_090--Hb_002876_300 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_013405_080 Hb_013405_080 Hb_000300_470--Hb_013405_080 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000300_470--Hb_002774_190 Hb_000046_540 Hb_000046_540 Hb_000300_470--Hb_000046_540 Hb_004218_190 Hb_004218_190 Hb_000300_470--Hb_004218_190 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_033312_010 Hb_033312_010 Hb_114310_070--Hb_033312_010 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_114310_070--Hb_002876_300 Hb_002150_140 Hb_002150_140 Hb_114310_070--Hb_002150_140 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29252 3.25346 6.70117 4.30111 2.58355 4.32765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63258 3.85779 2.60012 3.38758 8.15468

CAGE analysis