Hb_000237_230

Information

Type -
Description -
Location Contig237: 309250-318291
Sequence    

Annotation

kegg
ID rcu:RCOM_0970060
description transcription initiation factor ia, putative
nr
ID XP_012067215.1
description PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
swissprot
ID B2RS91
description RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1
trembl
ID A0A067LB99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26773 PE=4 SV=1
Gene Ontology
ID GO:0003743
description rna polymerase i-specific transcription initiation factor rrn3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24800: 309268-318059 , PASA_asmbl_24801: 315892-316069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_230 0.0 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
2 Hb_000258_410 0.0815699052 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
3 Hb_000732_020 0.0983861852 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
4 Hb_000814_090 0.0992773797 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000176_110 0.100058015 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
6 Hb_002955_010 0.1012831079 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
7 Hb_000645_150 0.1019031825 - - zinc finger protein, putative [Ricinus communis]
8 Hb_006922_080 0.1021071041 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
9 Hb_001829_010 0.1038788962 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
10 Hb_003384_030 0.1058494244 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
11 Hb_008406_160 0.1068168846 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
12 Hb_000078_100 0.1072493502 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
13 Hb_006913_040 0.1075524972 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
14 Hb_025557_020 0.1083403442 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
15 Hb_000849_100 0.1089351273 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
16 Hb_015941_030 0.1090911668 - - unknown [Populus trichocarpa]
17 Hb_007534_040 0.1097772507 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
18 Hb_000012_090 0.1101637504 - - 3'-5' exonuclease, putative [Ricinus communis]
19 Hb_009615_110 0.1103512029 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_000116_110 0.1104012167 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_230 Hb_000237_230 Hb_000258_410 Hb_000258_410 Hb_000237_230--Hb_000258_410 Hb_000732_020 Hb_000732_020 Hb_000237_230--Hb_000732_020 Hb_000814_090 Hb_000814_090 Hb_000237_230--Hb_000814_090 Hb_000176_110 Hb_000176_110 Hb_000237_230--Hb_000176_110 Hb_002955_010 Hb_002955_010 Hb_000237_230--Hb_002955_010 Hb_000645_150 Hb_000645_150 Hb_000237_230--Hb_000645_150 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000258_410--Hb_000176_110 Hb_000732_020--Hb_002955_010 Hb_113216_010 Hb_113216_010 Hb_000732_020--Hb_113216_010 Hb_001582_030 Hb_001582_030 Hb_000732_020--Hb_001582_030 Hb_002986_050 Hb_002986_050 Hb_000732_020--Hb_002986_050 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450 Hb_002725_070 Hb_002725_070 Hb_000814_090--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_000814_090--Hb_005635_010 Hb_006913_040 Hb_006913_040 Hb_000814_090--Hb_006913_040 Hb_001019_170 Hb_001019_170 Hb_000814_090--Hb_001019_170 Hb_000078_100 Hb_000078_100 Hb_000814_090--Hb_000078_100 Hb_002820_040 Hb_002820_040 Hb_000814_090--Hb_002820_040 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_000256_270 Hb_000256_270 Hb_002955_010--Hb_000256_270 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_000372_040 Hb_000372_040 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002955_010--Hb_002986_050 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.1415 28.467 10.129 21.6759 97.4054 95.2944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4806 34.8735 19.9486 20.5941 5.38235

CAGE analysis