Hb_000238_060

Information

Type -
Description -
Location Contig238: 179069-179392
Sequence    

Annotation

kegg
ID tcc:TCM_007393
description Hydroxyproline-rich glycoprotein family protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24986: 178808-179444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000238_060 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_001405_100 0.0532642578 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
3 Hb_000237_150 0.0712736972 - - Epoxide hydrolase 2 [Morus notabilis]
4 Hb_000852_050 0.0805054515 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
5 Hb_002671_110 0.0821437294 - - PREDICTED: remorin-like [Jatropha curcas]
6 Hb_000081_020 0.0917773132 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
7 Hb_005228_170 0.0941291809 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_000649_030 0.0945591753 - - scab resistance family protein [Populus trichocarpa]
9 Hb_001638_110 0.0966692486 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006006_070 0.0977363471 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000539_080 0.1000473679 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
12 Hb_166813_010 0.1016035504 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_002110_270 0.1071589089 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
14 Hb_076895_020 0.1147696581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
15 Hb_000616_050 0.1188520241 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
16 Hb_002150_010 0.1205193083 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
17 Hb_000948_070 0.1207039257 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
18 Hb_019229_020 0.1218654749 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_007432_050 0.1224280101 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
20 Hb_000758_030 0.1250718515 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000238_060 Hb_000238_060 Hb_001405_100 Hb_001405_100 Hb_000238_060--Hb_001405_100 Hb_000237_150 Hb_000237_150 Hb_000238_060--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_000238_060--Hb_000852_050 Hb_002671_110 Hb_002671_110 Hb_000238_060--Hb_002671_110 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_005228_170 Hb_005228_170 Hb_000238_060--Hb_005228_170 Hb_001405_100--Hb_000237_150 Hb_001405_100--Hb_002671_110 Hb_006006_070 Hb_006006_070 Hb_001405_100--Hb_006006_070 Hb_001405_100--Hb_000852_050 Hb_000649_030 Hb_000649_030 Hb_001405_100--Hb_000649_030 Hb_000237_150--Hb_000852_050 Hb_000616_050 Hb_000616_050 Hb_000237_150--Hb_000616_050 Hb_000237_150--Hb_000649_030 Hb_000237_150--Hb_002671_110 Hb_002150_010 Hb_002150_010 Hb_000852_050--Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_000852_050--Hb_002391_350 Hb_001638_110 Hb_001638_110 Hb_000852_050--Hb_001638_110 Hb_002671_110--Hb_005228_170 Hb_005218_070 Hb_005218_070 Hb_002671_110--Hb_005218_070 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_005064_040 Hb_005064_040 Hb_000081_020--Hb_005064_040 Hb_000539_080 Hb_000539_080 Hb_000081_020--Hb_000539_080 Hb_076895_020 Hb_076895_020 Hb_000081_020--Hb_076895_020 Hb_031340_030 Hb_031340_030 Hb_000081_020--Hb_031340_030 Hb_000081_020--Hb_005228_170 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.6209 2.27332 8.54884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 37.8693 0.786826

CAGE analysis