Hb_000239_020

Information

Type -
Description -
Location Contig239: 13707-14906
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01650g
description POPTRDRAFT_897142; hypothetical protein
nr
ID XP_012068224.1
description PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
swissprot
ID Q9FHS6
description F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
trembl
ID A0A067L324
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16030 PE=4 SV=1
Gene Ontology
ID GO:0044425
description f-box kelch-repeat protein at5g43190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25023: 12400-12854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_020 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
2 Hb_027393_030 0.1155399278 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
3 Hb_000367_260 0.1169735147 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
4 Hb_000549_040 0.1222535581 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
5 Hb_001504_330 0.1268132576 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
6 Hb_004993_060 0.1332950075 - - -
7 Hb_005542_060 0.1353367994 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000748_130 0.1354595738 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
9 Hb_031910_020 0.1383108453 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
10 Hb_000226_080 0.1396686114 - - prephenate dehydrogenase, putative [Ricinus communis]
11 Hb_005545_100 0.1431279819 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
12 Hb_000007_140 0.14370509 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
13 Hb_000392_310 0.146698222 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003972_080 0.149787726 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
15 Hb_007262_030 0.1506063474 - - -
16 Hb_002799_040 0.1612696211 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
17 Hb_056753_010 0.1629452454 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_001486_010 0.1634731846 - - adenylsulfate kinase, putative [Ricinus communis]
19 Hb_006824_050 0.1636366611 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
20 Hb_000928_110 0.1647542166 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000239_020 Hb_000239_020 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060 Hb_005545_100 Hb_005545_100 Hb_027393_030--Hb_005545_100 Hb_027393_030--Hb_000367_260 Hb_004375_150 Hb_004375_150 Hb_027393_030--Hb_004375_150 Hb_027393_030--Hb_005542_060 Hb_005228_070 Hb_005228_070 Hb_027393_030--Hb_005228_070 Hb_000367_260--Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_000367_260--Hb_000603_080 Hb_031910_020 Hb_031910_020 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_000549_040--Hb_031910_020 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_000549_040--Hb_004993_060 Hb_000549_040--Hb_000367_260 Hb_001314_070 Hb_001314_070 Hb_000549_040--Hb_001314_070 Hb_000549_040--Hb_005228_070 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_001504_330--Hb_031910_020 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_004993_060--Hb_031910_020 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_004785_140 Hb_004785_140 Hb_005542_060--Hb_004785_140 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_005542_060--Hb_011030_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5191 9.68649 4.96639 8.71996 1.46209 3.79754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3553 10.0527 25.528 8.04123 4.95348

CAGE analysis