Hb_000239_030

Information

Type -
Description -
Location Contig239: 55862-61134
Sequence    

Annotation

kegg
ID rcu:RCOM_1587520
description voltage-dependent anion-selective channel, putative
nr
ID XP_012068225.1
description PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
swissprot
ID Q9FJX3
description Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1
trembl
ID A0A067LBZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16031 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25025: 55853-61121
cDNA
(Sanger)
(ID:Location)		 010_I23.ab1: 56784-61115 , 041_B13.ab1: 56855-61121 , 041_D17.ab1: 56276-61082

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_030 0.0 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
2 Hb_000115_230 0.0761479768 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_001157_010 0.0839460176 - - deoxyhypusine synthase, putative [Ricinus communis]
4 Hb_003326_020 0.085872452 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
5 Hb_000915_120 0.0880075705 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
6 Hb_000236_150 0.0918172469 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_002217_450 0.0976973913 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
8 Hb_000905_180 0.0983172973 - - 60S ribosomal protein L31A [Hevea brasiliensis]
9 Hb_005000_180 0.0989925221 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
10 Hb_000881_080 0.0995618189 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000300_390 0.1010414796 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_005496_010 0.1028852311 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
13 Hb_001780_050 0.1033156518 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
14 Hb_002374_390 0.1038645081 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
15 Hb_000330_070 0.104465637 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
16 Hb_000878_020 0.1054833652 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_146225_010 0.1056776121 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
18 Hb_003185_050 0.1070352663 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
19 Hb_002811_080 0.1079956091 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
20 Hb_006588_080 0.1082790774 - - hypothetical protein JCGZ_25746 [Jatropha curcas]

Gene co-expression network

sample Hb_000239_030 Hb_000239_030 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_003326_020 Hb_003326_020 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450 Hb_015807_100 Hb_015807_100 Hb_000115_230--Hb_015807_100 Hb_001172_120 Hb_001172_120 Hb_000115_230--Hb_001172_120 Hb_007192_100 Hb_007192_100 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002838_030 Hb_002838_030 Hb_000915_120--Hb_002838_030 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_005914_200 Hb_005914_200 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_012539_020 Hb_012539_020 Hb_000236_150--Hb_012539_020 Hb_001141_030 Hb_001141_030 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_021409_090 Hb_021409_090 Hb_002217_450--Hb_021409_090 Hb_005841_050 Hb_005841_050 Hb_002217_450--Hb_005841_050 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0007 9.16908 10.5048 19.7446 11.5739 13.9435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.4128 96.342 50.9424 17.6705 5.58972

CAGE analysis