Hb_000239_040

Information

Type -
Description -
Location Contig239: 68514-69905
Sequence    

Annotation

kegg
ID rcu:RCOM_1587550
description sigma factor sigb regulation protein rsbq, putative (EC:3.1.1.1)
nr
ID XP_002510101.1
description sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
swissprot
ID J9U5U9
description Probable strigolactone esterase DAD2 OS=Petunia hybrida GN=DAD2 PE=1 SV=1
trembl
ID B9R708
description Sigma factor sigb regulation protein rsbq, putative OS=Ricinus communis GN=RCOM_1587550 PE=4 SV=1
Gene Ontology
ID GO:0052689
description probable strigolactone esterase dad2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25026: 68561-69752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_040 0.0 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
2 Hb_092462_020 0.1118845984 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_001269_670 0.1137121576 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
4 Hb_000282_080 0.1190693104 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000230_400 0.1204509902 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000796_160 0.1209477078 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_001314_080 0.1227196666 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
8 Hb_005162_090 0.1289252635 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
9 Hb_005563_070 0.1296948805 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
10 Hb_001946_050 0.1299700873 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002311_360 0.1305252454 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
12 Hb_001766_050 0.1306669371 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
13 Hb_005511_140 0.131141155 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_000261_020 0.1313582638 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
15 Hb_000161_130 0.1320426214 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
16 Hb_139294_010 0.1320438192 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000731_170 0.1328530051 - - PREDICTED: phospholipase A I [Jatropha curcas]
18 Hb_006502_060 0.1348416972 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000023_260 0.1352490017 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
20 Hb_000729_030 0.1353035226 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000239_040 Hb_000239_040 Hb_092462_020 Hb_092462_020 Hb_000239_040--Hb_092462_020 Hb_001269_670 Hb_001269_670 Hb_000239_040--Hb_001269_670 Hb_000282_080 Hb_000282_080 Hb_000239_040--Hb_000282_080 Hb_000230_400 Hb_000230_400 Hb_000239_040--Hb_000230_400 Hb_000796_160 Hb_000796_160 Hb_000239_040--Hb_000796_160 Hb_001314_080 Hb_001314_080 Hb_000239_040--Hb_001314_080 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_004724_270 Hb_004724_270 Hb_092462_020--Hb_004724_270 Hb_000729_030 Hb_000729_030 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_009847_030 Hb_009847_030 Hb_001269_670--Hb_009847_030 Hb_001269_670--Hb_000796_160 Hb_001410_070 Hb_001410_070 Hb_001269_670--Hb_001410_070 Hb_001769_170 Hb_001769_170 Hb_001269_670--Hb_001769_170 Hb_000105_050 Hb_000105_050 Hb_001269_670--Hb_000105_050 Hb_005511_140 Hb_005511_140 Hb_000282_080--Hb_005511_140 Hb_001195_450 Hb_001195_450 Hb_000282_080--Hb_001195_450 Hb_000282_080--Hb_001314_080 Hb_002758_010 Hb_002758_010 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_001080_090 Hb_001080_090 Hb_000282_080--Hb_001080_090 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_001935_100 Hb_001935_100 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000796_160--Hb_000230_400 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1888 48.4303 31.9944 41.1167 15.357 18.8351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7343 43.8514 24.8228 14.1982 62.3073

CAGE analysis