Hb_000239_050

Information

Type -
Description -
Location Contig239: 129655-131003
Sequence    

Annotation

kegg
ID rcu:RCOM_1587570
description cyclin d, putative
nr
ID XP_012068229.1
description PREDICTED: cyclin-D5-1-like [Jatropha curcas]
swissprot
ID Q0DQA9
description Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2
trembl
ID A0A067L331
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16035 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d5-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25029: 130432-130863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_050 0.0 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
2 Hb_127263_010 0.0423006671 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
3 Hb_000866_060 0.0664813716 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
4 Hb_000300_110 0.0677639586 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
5 Hb_000041_210 0.0745680603 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
6 Hb_007545_070 0.0750462739 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
7 Hb_000424_130 0.0805426705 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
8 Hb_012389_010 0.0822467125 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
9 Hb_067558_010 0.0837546344 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_001409_080 0.0869326336 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
11 Hb_002391_030 0.0914775567 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
12 Hb_003043_130 0.094414871 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
13 Hb_005181_190 0.0947947001 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
14 Hb_004994_030 0.0962659854 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
15 Hb_005535_070 0.0963548697 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000947_010 0.1022766712 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_006618_110 0.1022963509 - - -
18 Hb_015044_010 0.1026085536 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
19 Hb_006267_040 0.1031722698 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
20 Hb_000483_430 0.1032820181 - - -

Gene co-expression network

sample Hb_000239_050 Hb_000239_050 Hb_127263_010 Hb_127263_010 Hb_000239_050--Hb_127263_010 Hb_000866_060 Hb_000866_060 Hb_000239_050--Hb_000866_060 Hb_000300_110 Hb_000300_110 Hb_000239_050--Hb_000300_110 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_007545_070 Hb_007545_070 Hb_000239_050--Hb_007545_070 Hb_000424_130 Hb_000424_130 Hb_000239_050--Hb_000424_130 Hb_001409_080 Hb_001409_080 Hb_127263_010--Hb_001409_080 Hb_127263_010--Hb_000300_110 Hb_127263_010--Hb_000866_060 Hb_127263_010--Hb_000424_130 Hb_029920_010 Hb_029920_010 Hb_127263_010--Hb_029920_010 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_000866_060--Hb_001409_080 Hb_000866_060--Hb_000300_110 Hb_000300_110--Hb_029920_010 Hb_000300_110--Hb_007545_070 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350 Hb_012389_010 Hb_012389_010 Hb_000041_210--Hb_012389_010 Hb_067558_010 Hb_067558_010 Hb_000041_210--Hb_067558_010 Hb_000675_010 Hb_000675_010 Hb_000041_210--Hb_000675_010 Hb_131876_010 Hb_131876_010 Hb_000041_210--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_000041_210--Hb_000483_430 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_007545_070--Hb_000424_130 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_002835_310 Hb_000424_130--Hb_000300_110 Hb_000424_130--Hb_029920_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0930956 1.30839 0.61506 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.201812 1.36376

CAGE analysis