Hb_000239_070

Information

Type -
Description -
Location Contig239: 160055-177625
Sequence    

Annotation

kegg
ID rcu:RCOM_1587590
description protein with unknown function
nr
ID XP_012068232.1
description PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9H1I8
description Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens GN=ASCC2 PE=1 SV=3
trembl
ID A0A067LAV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16037 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ubiquitin system component cue isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25032: 160776-162841 , PASA_asmbl_25034: 162844-174696 , PASA_asmbl_25037: 174195-174574 , PASA_asmbl_25038: 176922-177380 , PASA_asmbl_25039: 174936-177034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_070 0.0 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
2 Hb_000340_160 0.0524019141 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
3 Hb_000227_380 0.0637181961 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_002883_010 0.0641435011 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
5 Hb_000331_190 0.0659332168 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
6 Hb_175338_020 0.0721412602 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
7 Hb_002235_320 0.0725203551 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_007849_020 0.0758512518 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
9 Hb_000567_010 0.076790067 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
10 Hb_002652_040 0.0770376986 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_000699_250 0.0796952775 - - Poly(rC)-binding protein, putative [Ricinus communis]
12 Hb_004037_030 0.0804144051 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
13 Hb_006829_090 0.0807614605 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_003866_020 0.0810709695 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001301_210 0.0814777577 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
16 Hb_005494_020 0.0840829572 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
17 Hb_004970_150 0.0842974583 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
18 Hb_006913_040 0.0845616346 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
19 Hb_004225_130 0.0850583523 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
20 Hb_000594_020 0.0852651714 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000239_070 Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_000239_070--Hb_000340_160 Hb_000227_380 Hb_000227_380 Hb_000239_070--Hb_000227_380 Hb_002883_010 Hb_002883_010 Hb_000239_070--Hb_002883_010 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_175338_020 Hb_175338_020 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320 Hb_000699_250 Hb_000699_250 Hb_000340_160--Hb_000699_250 Hb_000340_160--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_000340_160--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000340_160--Hb_000567_010 Hb_125092_020 Hb_125092_020 Hb_000340_160--Hb_125092_020 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_000227_380--Hb_175338_020 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_000331_190--Hb_125092_020 Hb_000331_190--Hb_024990_010 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000331_190--Hb_000567_010 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_175338_020--Hb_007849_020 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002235_320--Hb_002883_010 Hb_006002_030 Hb_006002_030 Hb_002235_320--Hb_006002_030 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9073 26.3167 8.05156 9.38307 45.5426 55.3936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3914 14.7254 12.0248 20.4819 10.2938

CAGE analysis