Hb_000239_110

Information

Type -
Description -
Location Contig239: 232160-238078
Sequence    

Annotation

kegg
ID rcu:RCOM_1587610
description Adenine phosphoribosyltransferase, putative (EC:2.4.2.7)
nr
ID XP_012068236.1
description PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
swissprot
ID P31166
description Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2
trembl
ID A0A067L336
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16040 PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenine phosphoribosyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25042: 232188-238046
cDNA
(Sanger)
(ID:Location)		 003_F07.ab1: 232425-237640 , 019_F18.ab1: 232501-237640 , 020_F15.ab1: 232512-237965 , 030_K23.ab1: 235299-237960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_110 0.0 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
2 Hb_003398_020 0.147495128 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
3 Hb_005725_100 0.1679843974 - - hypothetical protein 30 [Hevea brasiliensis]
4 Hb_042871_010 0.1880707806 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
5 Hb_003376_380 0.1895708277 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
6 Hb_004429_110 0.1946163762 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000500_210 0.2068098737 - - -
8 Hb_001016_080 0.2080149458 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
9 Hb_001449_100 0.208937684 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
10 Hb_001266_030 0.2170472039 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
11 Hb_011609_110 0.2185003611 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
12 Hb_000025_440 0.221494353 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
13 Hb_100180_010 0.2217295833 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
14 Hb_002260_160 0.2232102115 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001623_070 0.2238546123 - - cytochrome B5 isoform 1, putative [Ricinus communis]
16 Hb_182005_010 0.2259085379 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_005054_040 0.2263991585 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
18 Hb_003057_020 0.2267579179 - - 40S ribosomal protein S23, putative [Ricinus communis]
19 Hb_001140_240 0.2282363852 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_000454_180 0.228867452 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]

Gene co-expression network

sample Hb_000239_110 Hb_000239_110 Hb_003398_020 Hb_003398_020 Hb_000239_110--Hb_003398_020 Hb_005725_100 Hb_005725_100 Hb_000239_110--Hb_005725_100 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_003376_380 Hb_003376_380 Hb_000239_110--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_000239_110--Hb_004429_110 Hb_000500_210 Hb_000500_210 Hb_000239_110--Hb_000500_210 Hb_003398_020--Hb_003376_380 Hb_003398_020--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_003398_020--Hb_007313_080 Hb_002900_130 Hb_002900_130 Hb_003398_020--Hb_002900_130 Hb_001449_100 Hb_001449_100 Hb_003398_020--Hb_001449_100 Hb_005725_100--Hb_004429_110 Hb_183612_080 Hb_183612_080 Hb_005725_100--Hb_183612_080 Hb_001266_030 Hb_001266_030 Hb_005725_100--Hb_001266_030 Hb_000879_210 Hb_000879_210 Hb_005725_100--Hb_000879_210 Hb_000617_110 Hb_000617_110 Hb_005725_100--Hb_000617_110 Hb_000656_410 Hb_000656_410 Hb_042871_010--Hb_000656_410 Hb_033834_050 Hb_033834_050 Hb_042871_010--Hb_033834_050 Hb_011609_110 Hb_011609_110 Hb_042871_010--Hb_011609_110 Hb_000062_300 Hb_000062_300 Hb_042871_010--Hb_000062_300 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080 Hb_003057_020 Hb_003057_020 Hb_003376_380--Hb_003057_020 Hb_003376_380--Hb_002900_130 Hb_003376_380--Hb_001449_100 Hb_001623_070 Hb_001623_070 Hb_003376_380--Hb_001623_070 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_000500_210--Hb_004429_110 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.15534 25.7385 9.04555 87.5885 2.21007 6.35872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.593 480.11 13.2118 72.918 16.5772

CAGE analysis