Hb_000240_030

Information

Type -
Description -
Location Contig240: 53105-58434
Sequence    

Annotation

kegg
ID rcu:RCOM_1423990
description hypothetical protein
nr
ID XP_002516405.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6PGS5
description Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
trembl
ID B9RRN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1423990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 56-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25130: 53337-58515 , PASA_asmbl_25131: 57448-58055 , PASA_asmbl_25132: 53243-58629 , PASA_asmbl_25133: 53243-57369 , PASA_asmbl_25134: 53918-58562
cDNA
(Sanger)
(ID:Location)		 010_E21.ab1: 53337-56833 , 028_F14.ab1: 53337-56866

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000240_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000590_120 0.0803966979 - - dehydroascorbate reductase, putative [Ricinus communis]
3 Hb_066842_010 0.0887067 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
4 Hb_006683_070 0.0914989448 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
5 Hb_011249_020 0.0978576753 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
6 Hb_002392_010 0.1004365512 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
7 Hb_002110_100 0.1045898494 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_009661_030 0.1048988461 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
9 Hb_001269_190 0.1060974837 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
10 Hb_015934_120 0.106393055 - - PREDICTED: callose synthase 7 [Vitis vinifera]
11 Hb_008147_090 0.1067612093 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020390_010 0.1091534338 - - PREDICTED: expansin-A13 [Jatropha curcas]
13 Hb_000136_100 0.1103263907 - - PREDICTED: syntaxin-61 [Jatropha curcas]
14 Hb_003994_030 0.1107202587 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
15 Hb_000172_440 0.1108964735 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
16 Hb_011606_020 0.111227565 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
17 Hb_000243_350 0.1129803491 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
18 Hb_003207_020 0.1129879705 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
19 Hb_032920_070 0.1135850605 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
20 Hb_170138_010 0.1137128912 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000240_030 Hb_000240_030 Hb_000590_120 Hb_000590_120 Hb_000240_030--Hb_000590_120 Hb_066842_010 Hb_066842_010 Hb_000240_030--Hb_066842_010 Hb_006683_070 Hb_006683_070 Hb_000240_030--Hb_006683_070 Hb_011249_020 Hb_011249_020 Hb_000240_030--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_000240_030--Hb_002392_010 Hb_002110_100 Hb_002110_100 Hb_000240_030--Hb_002110_100 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_185255_010 Hb_185255_010 Hb_006683_070--Hb_185255_010 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_001307_030 Hb_001307_030 Hb_011249_020--Hb_001307_030 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_011249_020--Hb_000297_120 Hb_000649_140 Hb_000649_140 Hb_011249_020--Hb_000649_140 Hb_011249_020--Hb_006683_070 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002392_010--Hb_002110_100 Hb_002392_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20608 5.43382 13.0267 35.9046 5.24773 10.2869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2357 13.9831 14.4399 11.0548 26.6809

CAGE analysis