Hb_000240_060

Information

Type -
Description -
Location Contig240: 145724-150355
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000240_060 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_042778_010 0.2651531796 - - -
3 Hb_137133_010 0.3114603574 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_001357_070 0.3311900136 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
5 Hb_110559_010 0.3319313338 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_062562_010 0.3358851229 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
7 Hb_000521_010 0.3380384178 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
8 Hb_144451_010 0.3392588649 - - hypothetical protein VITISV_001808 [Vitis vinifera]
9 Hb_000510_020 0.3394025305 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
10 Hb_002893_160 0.3408105941 - - peptidase, putative [Ricinus communis]
11 Hb_010896_020 0.3408341631 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004147_040 0.3438989977 - - hypothetical protein JCGZ_15918 [Jatropha curcas]
13 Hb_001243_010 0.3724895004 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
14 Hb_011640_030 0.3903320675 - - 60S ribosomal protein L34A [Hevea brasiliensis]
15 Hb_100485_010 0.4003966027 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_001534_010 0.405634055 - - Alpha-expansin 3 precursor [Theobroma cacao]
17 Hb_015322_040 0.4059956657 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
18 Hb_065182_010 0.4063710381 - - hypothetical protein JCGZ_20878 [Jatropha curcas]
19 Hb_000098_320 0.4087321929 - - -
20 Hb_098315_030 0.4108230593 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]

Gene co-expression network

sample Hb_000240_060 Hb_000240_060 Hb_042778_010 Hb_042778_010 Hb_000240_060--Hb_042778_010 Hb_137133_010 Hb_137133_010 Hb_000240_060--Hb_137133_010 Hb_001357_070 Hb_001357_070 Hb_000240_060--Hb_001357_070 Hb_110559_010 Hb_110559_010 Hb_000240_060--Hb_110559_010 Hb_062562_010 Hb_062562_010 Hb_000240_060--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_000240_060--Hb_000521_010 Hb_065182_010 Hb_065182_010 Hb_042778_010--Hb_065182_010 Hb_042778_010--Hb_062562_010 Hb_042778_010--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_042778_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_042778_010--Hb_000510_020 Hb_137133_010--Hb_001357_070 Hb_137133_010--Hb_110559_010 Hb_137133_010--Hb_062562_010 Hb_137133_010--Hb_000521_010 Hb_137133_010--Hb_144451_010 Hb_137133_010--Hb_000510_020 Hb_001357_070--Hb_110559_010 Hb_001357_070--Hb_062562_010 Hb_001357_070--Hb_000521_010 Hb_001357_070--Hb_144451_010 Hb_001357_070--Hb_000510_020 Hb_002893_160 Hb_002893_160 Hb_001357_070--Hb_002893_160 Hb_110559_010--Hb_062562_010 Hb_110559_010--Hb_000521_010 Hb_110559_010--Hb_144451_010 Hb_110559_010--Hb_000510_020 Hb_110559_010--Hb_002893_160 Hb_062562_010--Hb_000521_010 Hb_062562_010--Hb_144451_010 Hb_062562_010--Hb_000510_020 Hb_062562_010--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_062562_010--Hb_010896_020 Hb_000521_010--Hb_144451_010 Hb_000521_010--Hb_000510_020 Hb_000521_010--Hb_002893_160 Hb_000521_010--Hb_010896_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00380235 0 0 0.00432863 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209579 0 0.0158445 0 0

CAGE analysis