Hb_000243_020

Information

Type -
Description -
Location Contig243: 3756-4058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003824
description d-2-hydroxyglutarate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25344: 4869-6087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_020 0.0 - - -
2 Hb_076038_010 0.1895376152 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001277_160 0.2147847483 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
4 Hb_000334_200 0.22670561 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_002326_070 0.2567342234 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
6 Hb_000932_080 0.2616576491 - - -
7 Hb_001396_170 0.2752888943 - - unnamed protein product [Vitis vinifera]
8 Hb_181975_010 0.2766923975 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
9 Hb_025306_010 0.2880397741 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
10 Hb_001277_190 0.2889237514 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
11 Hb_005565_010 0.2890873474 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_075449_020 0.2918149209 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
13 Hb_001493_010 0.2953627925 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
14 Hb_000987_130 0.2953675248 - - -
15 Hb_004204_090 0.2961250997 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
16 Hb_023647_040 0.2978904388 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_080147_080 0.2996241468 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_062585_010 0.299975885 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
19 Hb_002205_100 0.3002823089 - - ATP binding protein, putative [Ricinus communis]
20 Hb_079733_010 0.3076181977 - - -

Gene co-expression network

sample Hb_000243_020 Hb_000243_020 Hb_076038_010 Hb_076038_010 Hb_000243_020--Hb_076038_010 Hb_001277_160 Hb_001277_160 Hb_000243_020--Hb_001277_160 Hb_000334_200 Hb_000334_200 Hb_000243_020--Hb_000334_200 Hb_002326_070 Hb_002326_070 Hb_000243_020--Hb_002326_070 Hb_000932_080 Hb_000932_080 Hb_000243_020--Hb_000932_080 Hb_001396_170 Hb_001396_170 Hb_000243_020--Hb_001396_170 Hb_076038_010--Hb_001277_160 Hb_100105_010 Hb_100105_010 Hb_076038_010--Hb_100105_010 Hb_001277_190 Hb_001277_190 Hb_076038_010--Hb_001277_190 Hb_001449_060 Hb_001449_060 Hb_076038_010--Hb_001449_060 Hb_075230_010 Hb_075230_010 Hb_076038_010--Hb_075230_010 Hb_001277_160--Hb_001277_190 Hb_001341_110 Hb_001341_110 Hb_001277_160--Hb_001341_110 Hb_007778_020 Hb_007778_020 Hb_001277_160--Hb_007778_020 Hb_004204_090 Hb_004204_090 Hb_001277_160--Hb_004204_090 Hb_181975_010 Hb_181975_010 Hb_000334_200--Hb_181975_010 Hb_000334_200--Hb_002326_070 Hb_097433_020 Hb_097433_020 Hb_000334_200--Hb_097433_020 Hb_002205_100 Hb_002205_100 Hb_000334_200--Hb_002205_100 Hb_000334_200--Hb_001396_170 Hb_080147_080 Hb_080147_080 Hb_002326_070--Hb_080147_080 Hb_079733_010 Hb_079733_010 Hb_002326_070--Hb_079733_010 Hb_002326_070--Hb_181975_010 Hb_005464_030 Hb_005464_030 Hb_002326_070--Hb_005464_030 Hb_000834_240 Hb_000834_240 Hb_002326_070--Hb_000834_240 Hb_001907_100 Hb_001907_100 Hb_002326_070--Hb_001907_100 Hb_018247_010 Hb_018247_010 Hb_000932_080--Hb_018247_010 Hb_000932_080--Hb_076038_010 Hb_099046_010 Hb_099046_010 Hb_000932_080--Hb_099046_010 Hb_001493_010 Hb_001493_010 Hb_000932_080--Hb_001493_010 Hb_000932_080--Hb_002205_100 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_001396_170--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_001396_170--Hb_000574_150 Hb_007978_020 Hb_007978_020 Hb_001396_170--Hb_007978_020 Hb_023647_040 Hb_023647_040 Hb_001396_170--Hb_023647_040 Hb_000003_390 Hb_000003_390 Hb_001396_170--Hb_000003_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37708 2.65772 0.268437 0.439379 0.145815 1.11264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.730133 0.287496 0 0 0

CAGE analysis