Hb_000243_040

Information

Type -
Description -
Location Contig243: 8865-17099
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0006139
description probable dimethyladenosine transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25345: 11156-11664 , PASA_asmbl_25346: 6190-12590 , PASA_asmbl_25347: 12143-20502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_040 0.0 - - -
2 Hb_000994_110 0.1537284414 - - conserved hypothetical protein [Ricinus communis]
3 Hb_078185_010 0.1588855535 - - -
4 Hb_000584_020 0.1594079544 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
5 Hb_000352_290 0.1631027348 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
6 Hb_182964_010 0.1650327829 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
7 Hb_000010_210 0.1660015542 - - PREDICTED: centromere protein X [Jatropha curcas]
8 Hb_066913_010 0.1671657761 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
9 Hb_001754_070 0.1689581568 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
10 Hb_014783_010 0.1735392392 - - cold-inducible RNA binding protein, putative [Ricinus communis]
11 Hb_082407_010 0.1750118941 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
12 Hb_001233_020 0.175617148 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
13 Hb_004784_020 0.1758807711 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
14 Hb_060715_010 0.1775984702 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
15 Hb_014834_140 0.1776083005 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
16 Hb_000268_010 0.1790010974 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003405_060 0.1803807889 - - -
18 Hb_003861_040 0.1822180605 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
19 Hb_016604_030 0.1829713538 - - histone H4 [Zea mays]
20 Hb_000408_050 0.1843499792 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]

Gene co-expression network

sample Hb_000243_040 Hb_000243_040 Hb_000994_110 Hb_000994_110 Hb_000243_040--Hb_000994_110 Hb_078185_010 Hb_078185_010 Hb_000243_040--Hb_078185_010 Hb_000584_020 Hb_000584_020 Hb_000243_040--Hb_000584_020 Hb_000352_290 Hb_000352_290 Hb_000243_040--Hb_000352_290 Hb_182964_010 Hb_182964_010 Hb_000243_040--Hb_182964_010 Hb_000010_210 Hb_000010_210 Hb_000243_040--Hb_000010_210 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_001233_020 Hb_001233_020 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_004784_020 Hb_004784_020 Hb_078185_010--Hb_004784_020 Hb_001817_090 Hb_001817_090 Hb_078185_010--Hb_001817_090 Hb_002289_120 Hb_002289_120 Hb_078185_010--Hb_002289_120 Hb_031089_040 Hb_031089_040 Hb_078185_010--Hb_031089_040 Hb_004306_020 Hb_004306_020 Hb_078185_010--Hb_004306_020 Hb_005278_020 Hb_005278_020 Hb_078185_010--Hb_005278_020 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_178227_010 Hb_178227_010 Hb_000584_020--Hb_178227_010 Hb_000473_020 Hb_000473_020 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_005667_040 Hb_005667_040 Hb_000584_020--Hb_005667_040 Hb_000584_020--Hb_000352_290 Hb_000352_290--Hb_001754_070 Hb_001842_050 Hb_001842_050 Hb_000352_290--Hb_001842_050 Hb_004125_110 Hb_004125_110 Hb_000352_290--Hb_004125_110 Hb_000084_260 Hb_000084_260 Hb_000352_290--Hb_000084_260 Hb_000352_290--Hb_178227_010 Hb_182964_010--Hb_006995_040 Hb_016604_030 Hb_016604_030 Hb_182964_010--Hb_016604_030 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_182964_010--Hb_007545_050 Hb_182964_010--Hb_001754_070 Hb_001019_080 Hb_001019_080 Hb_000010_210--Hb_001019_080 Hb_007432_080 Hb_007432_080 Hb_000010_210--Hb_007432_080 Hb_000010_210--Hb_002289_120 Hb_000186_190 Hb_000186_190 Hb_000010_210--Hb_000186_190 Hb_086703_010 Hb_086703_010 Hb_000010_210--Hb_086703_010 Hb_003878_010 Hb_003878_010 Hb_000010_210--Hb_003878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164678 0.0552222 0.139023 0.572255 0.228081 0.397145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.412443 0.594544 0.0976442 0.0875511 0

CAGE analysis