Hb_000243_080

Information

Type -
Description -
Location Contig243: 47231-53265
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13540g
description POPTRDRAFT_719629; beta-galactosidase family protein
nr
ID XP_012078404.1
description PREDICTED: beta-galactosidase 3 [Jatropha curcas]
swissprot
ID Q9SCV9
description Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1
trembl
ID B9HFB3
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0007s13540g PE=3 SV=2
Gene Ontology
ID GO:0004565
description beta-galactosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25350: 47189-53262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_080 0.0 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
2 Hb_019516_080 0.1186434729 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000914_170 0.1283890258 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
4 Hb_000103_320 0.1295457962 - - Stem-specific protein TSJT1, putative [Ricinus communis]
5 Hb_000138_170 0.1312456761 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
6 Hb_003687_150 0.1360006259 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
7 Hb_000272_140 0.1367385485 - - Protein bem46, putative [Ricinus communis]
8 Hb_000032_440 0.1390251857 - - protein with unknown function [Ricinus communis]
9 Hb_005433_040 0.1413662692 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
10 Hb_003849_100 0.1423057492 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
11 Hb_001135_080 0.1475658521 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
12 Hb_001700_030 0.1493698639 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
13 Hb_000027_150 0.15077338 - - mitochondrial carrier protein, putative [Ricinus communis]
14 Hb_009510_020 0.1511476118 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
15 Hb_000982_070 0.1523152719 - - unnamed protein product [Vitis vinifera]
16 Hb_000322_140 0.152717532 - - hypothetical protein RCOM_1047200 [Ricinus communis]
17 Hb_001318_250 0.1528233593 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
18 Hb_000260_210 0.1539187221 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007926_060 0.154178679 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
20 Hb_003605_160 0.1582514797 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]

Gene co-expression network

sample Hb_000243_080 Hb_000243_080 Hb_019516_080 Hb_019516_080 Hb_000243_080--Hb_019516_080 Hb_000914_170 Hb_000914_170 Hb_000243_080--Hb_000914_170 Hb_000103_320 Hb_000103_320 Hb_000243_080--Hb_000103_320 Hb_000138_170 Hb_000138_170 Hb_000243_080--Hb_000138_170 Hb_003687_150 Hb_003687_150 Hb_000243_080--Hb_003687_150 Hb_000272_140 Hb_000272_140 Hb_000243_080--Hb_000272_140 Hb_027073_050 Hb_027073_050 Hb_019516_080--Hb_027073_050 Hb_019516_080--Hb_000103_320 Hb_001439_200 Hb_001439_200 Hb_019516_080--Hb_001439_200 Hb_019516_080--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_019516_080--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_019516_080--Hb_000300_220 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_000914_170--Hb_003687_150 Hb_002260_030 Hb_002260_030 Hb_000914_170--Hb_002260_030 Hb_000914_170--Hb_000046_100 Hb_000638_250 Hb_000638_250 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_000826_090 Hb_000826_090 Hb_000138_170--Hb_000826_090 Hb_006442_020 Hb_006442_020 Hb_000138_170--Hb_006442_020 Hb_003894_080 Hb_003894_080 Hb_000138_170--Hb_003894_080 Hb_111985_110 Hb_111985_110 Hb_000138_170--Hb_111985_110 Hb_000138_170--Hb_019516_080 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_162275_030 Hb_162275_030 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000042_200 Hb_000042_200 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9788 6.00832 22.9911 53.6179 12.6727 26.0855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.131 47.826 63.7322 5.27663 16.9289

CAGE analysis