Hb_000243_090

Information

Type -
Description -
Location Contig243: 57226-58402
Sequence    

Annotation

kegg
ID rcu:RCOM_0387240
description hypothetical protein
nr
ID XP_012078400.1
description PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
swissprot
ID Q9SD42
description Protein RTE1-HOMOLOG OS=Arabidopsis thaliana GN=RTH PE=2 SV=1
trembl
ID A0A067KCD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13671 PE=4 SV=1
Gene Ontology
ID GO:0006661
description protein rte1-homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_090 0.0 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
2 Hb_011639_080 0.1944561064 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
3 Hb_007416_370 0.2060485976 - - conserved hypothetical protein [Ricinus communis]
4 Hb_098315_070 0.2090607915 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
5 Hb_149838_010 0.2169324716 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
6 Hb_007456_010 0.2193412068 - - hypothetical protein L484_003540 [Morus notabilis]
7 Hb_000265_220 0.2204891947 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
8 Hb_004994_340 0.2248698278 - - -
9 Hb_002896_060 0.2265745562 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
10 Hb_002232_190 0.2266791258 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027380_030 0.2285090294 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
12 Hb_000946_170 0.2312655642 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
13 Hb_002686_330 0.2316054558 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
14 Hb_002805_060 0.2318317372 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
15 Hb_000207_190 0.2319080837 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
16 Hb_002708_020 0.232204203 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
17 Hb_000205_150 0.2326139173 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
18 Hb_027402_090 0.2329505929 - - endonuclease, putative [Ricinus communis]
19 Hb_012586_050 0.2332098735 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
20 Hb_001433_020 0.2336956585 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]

Gene co-expression network

sample Hb_000243_090 Hb_000243_090 Hb_011639_080 Hb_011639_080 Hb_000243_090--Hb_011639_080 Hb_007416_370 Hb_007416_370 Hb_000243_090--Hb_007416_370 Hb_098315_070 Hb_098315_070 Hb_000243_090--Hb_098315_070 Hb_149838_010 Hb_149838_010 Hb_000243_090--Hb_149838_010 Hb_007456_010 Hb_007456_010 Hb_000243_090--Hb_007456_010 Hb_000265_220 Hb_000265_220 Hb_000243_090--Hb_000265_220 Hb_000454_190 Hb_000454_190 Hb_011639_080--Hb_000454_190 Hb_019516_030 Hb_019516_030 Hb_011639_080--Hb_019516_030 Hb_006570_010 Hb_006570_010 Hb_011639_080--Hb_006570_010 Hb_002150_110 Hb_002150_110 Hb_011639_080--Hb_002150_110 Hb_000175_630 Hb_000175_630 Hb_011639_080--Hb_000175_630 Hb_002518_300 Hb_002518_300 Hb_007416_370--Hb_002518_300 Hb_005527_030 Hb_005527_030 Hb_007416_370--Hb_005527_030 Hb_003243_020 Hb_003243_020 Hb_007416_370--Hb_003243_020 Hb_008595_010 Hb_008595_010 Hb_007416_370--Hb_008595_010 Hb_000342_080 Hb_000342_080 Hb_007416_370--Hb_000342_080 Hb_009851_110 Hb_009851_110 Hb_007416_370--Hb_009851_110 Hb_000453_040 Hb_000453_040 Hb_098315_070--Hb_000453_040 Hb_002042_030 Hb_002042_030 Hb_098315_070--Hb_002042_030 Hb_002232_190 Hb_002232_190 Hb_098315_070--Hb_002232_190 Hb_003994_140 Hb_003994_140 Hb_098315_070--Hb_003994_140 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060 Hb_002783_020 Hb_002783_020 Hb_149838_010--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_149838_010--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_149838_010--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_149838_010--Hb_002708_020 Hb_149838_010--Hb_000265_220 Hb_002686_330 Hb_002686_330 Hb_149838_010--Hb_002686_330 Hb_000453_140 Hb_000453_140 Hb_007456_010--Hb_000453_140 Hb_027380_030 Hb_027380_030 Hb_007456_010--Hb_027380_030 Hb_002307_350 Hb_002307_350 Hb_007456_010--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_007456_010--Hb_006915_020 Hb_000021_020 Hb_000021_020 Hb_007456_010--Hb_000021_020 Hb_001198_150 Hb_001198_150 Hb_007456_010--Hb_001198_150 Hb_000809_210 Hb_000809_210 Hb_000265_220--Hb_000809_210 Hb_000265_220--Hb_002896_060 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936734 0.831978 5.58047 1.32357 8.91428 5.04602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05242 1.28742 0.419741 0.890205 1.67825

CAGE analysis