Hb_000243_110

Information

Type -
Description -
Location Contig243: 63954-66295
Sequence    

Annotation

kegg
ID rcu:RCOM_0387280
description Auxin-induced protein 5NG4, putative
nr
ID XP_012078396.1
description PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
swissprot
ID Q94AP3
description Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1
trembl
ID A0A067KK89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13668 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_110 0.0 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
2 Hb_000011_480 0.2039160751 - - zinc finger protein, putative [Ricinus communis]
3 Hb_004894_010 0.2134439068 - - -
4 Hb_037960_010 0.2255410942 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000025_020 0.2259567199 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
6 Hb_001410_100 0.2450134303 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
7 Hb_000483_110 0.2493255301 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
8 Hb_002325_020 0.2585106056 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000541_020 0.2585201255 - - -
10 Hb_001225_060 0.2616219623 - - BnaC03g58850D [Brassica napus]
11 Hb_000097_040 0.2617798894 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
12 Hb_011618_040 0.262507229 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000363_470 0.2646278044 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
14 Hb_005539_160 0.2689183677 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
15 Hb_000556_110 0.2690686947 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
16 Hb_010521_010 0.2696095447 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
17 Hb_004041_090 0.2707620028 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022250_120 0.2713634765 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
19 Hb_096811_010 0.2787998731 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
20 Hb_002422_040 0.2831322559 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]

Gene co-expression network

sample Hb_000243_110 Hb_000243_110 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_004894_010 Hb_004894_010 Hb_000243_110--Hb_004894_010 Hb_037960_010 Hb_037960_010 Hb_000243_110--Hb_037960_010 Hb_000025_020 Hb_000025_020 Hb_000243_110--Hb_000025_020 Hb_001410_100 Hb_001410_100 Hb_000243_110--Hb_001410_100 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110 Hb_000541_020 Hb_000541_020 Hb_000011_480--Hb_000541_020 Hb_059379_020 Hb_059379_020 Hb_000011_480--Hb_059379_020 Hb_004041_090 Hb_004041_090 Hb_000011_480--Hb_004041_090 Hb_006054_020 Hb_006054_020 Hb_000011_480--Hb_006054_020 Hb_022250_120 Hb_022250_120 Hb_000011_480--Hb_022250_120 Hb_004894_010--Hb_037960_010 Hb_002639_010 Hb_002639_010 Hb_004894_010--Hb_002639_010 Hb_004894_010--Hb_001410_100 Hb_019893_010 Hb_019893_010 Hb_004894_010--Hb_019893_010 Hb_022819_010 Hb_022819_010 Hb_004894_010--Hb_022819_010 Hb_037960_010--Hb_001410_100 Hb_011382_030 Hb_011382_030 Hb_037960_010--Hb_011382_030 Hb_043903_010 Hb_043903_010 Hb_037960_010--Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_037960_010--Hb_000375_040 Hb_003446_030 Hb_003446_030 Hb_037960_010--Hb_003446_030 Hb_145535_010 Hb_145535_010 Hb_037960_010--Hb_145535_010 Hb_002325_020 Hb_002325_020 Hb_000025_020--Hb_002325_020 Hb_005539_160 Hb_005539_160 Hb_000025_020--Hb_005539_160 Hb_000010_120 Hb_000010_120 Hb_000025_020--Hb_000010_120 Hb_000556_110 Hb_000556_110 Hb_000025_020--Hb_000556_110 Hb_003071_060 Hb_003071_060 Hb_000025_020--Hb_003071_060 Hb_006478_180 Hb_006478_180 Hb_000025_020--Hb_006478_180 Hb_002595_020 Hb_002595_020 Hb_001410_100--Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_001410_100--Hb_031862_280 Hb_089610_010 Hb_089610_010 Hb_001410_100--Hb_089610_010 Hb_011618_040 Hb_011618_040 Hb_000483_110--Hb_011618_040 Hb_058116_010 Hb_058116_010 Hb_000483_110--Hb_058116_010 Hb_002110_260 Hb_002110_260 Hb_000483_110--Hb_002110_260 Hb_000483_110--Hb_000556_110 Hb_096811_010 Hb_096811_010 Hb_000483_110--Hb_096811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0651221 1.51918 0.150974 0.117265 0.427117 1.31306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.23417 0.0983626

CAGE analysis