Hb_000243_140

Information

Type transcription factor
Description TF Family: SRS
Location Contig243: 120946-122586
Sequence    

Annotation

kegg
ID tcc:TCM_000274
description Lateral root primordium protein-related, putative
nr
ID XP_007046785.1
description Lateral root primordium protein-related, putative [Theobroma cacao]
swissprot
ID Q9SD40
description Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2
trembl
ID A0A061DFV6
description Lateral root primordium protein-related, putative OS=Theobroma cacao GN=TCM_000274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25364: 121001-121544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_140 0.0 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
2 Hb_009510_040 0.138310012 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
3 Hb_001117_070 0.1451739561 - - 30S ribosomal protein S19, putative [Ricinus communis]
4 Hb_000640_300 0.1587725814 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
5 Hb_001619_080 0.1762302104 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005333_150 0.1820050999 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
7 Hb_003052_220 0.1875849687 - - -
8 Hb_005568_080 0.1891667578 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000003_050 0.1894624189 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
10 Hb_003226_160 0.1983253142 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
11 Hb_000589_400 0.198646402 - - ESC, putative [Ricinus communis]
12 Hb_015690_020 0.1998775389 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_007451_020 0.2049384883 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
14 Hb_000723_160 0.2101127051 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
15 Hb_009486_190 0.2113451622 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000196_090 0.2117339039 - - axonemal dynein light chain, putative [Ricinus communis]
17 Hb_001789_080 0.2120998838 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
18 Hb_001969_090 0.2122757918 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
19 Hb_002435_110 0.2141693856 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
20 Hb_165669_010 0.214669196 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_140 Hb_000243_140 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_000796_250 Hb_000796_250 Hb_001117_070--Hb_000796_250 Hb_001117_070--Hb_009510_040 Hb_001902_190 Hb_001902_190 Hb_001117_070--Hb_001902_190 Hb_001117_070--Hb_000640_300 Hb_000432_040 Hb_000432_040 Hb_001117_070--Hb_000432_040 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_001619_080--Hb_003052_220 Hb_001619_080--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_001619_080--Hb_000723_160 Hb_001619_080--Hb_009510_040 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_003226_160 Hb_003226_160 Hb_005333_150--Hb_003226_160 Hb_005333_150--Hb_007451_020 Hb_002798_010 Hb_002798_010 Hb_005333_150--Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_005333_150--Hb_006922_060 Hb_005333_150--Hb_001117_070 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080 Hb_000260_290 Hb_000260_290 Hb_003052_220--Hb_000260_290 Hb_015690_020 Hb_015690_020 Hb_003052_220--Hb_015690_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58556 5.95357 0.3881 0.283346 1.40042 2.07292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87141 8.49939 5.90554 8.21061 0.729977

CAGE analysis