Hb_000243_180

Information

Type -
Description -
Location Contig243: 161369-164637
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13650g
description POPTRDRAFT_832403; mRNA for putative aldehyde dehydrogenase family protein
nr
ID XP_012078389.1
description PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
swissprot
ID Q70E96
description Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=2 SV=2
trembl
ID A0A067KCB6
description Aldehyde dehydrogenase OS=Jatropha curcas GN=JCGZ_13661 PE=3 SV=1
Gene Ontology
ID GO:0005783
description aldehyde dehydrogenase family 3 member f1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25367: 161202-164628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_180 0.0 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
2 Hb_003226_040 0.0695695123 - - PREDICTED: endoglucanase 17 [Populus euphratica]
3 Hb_004117_060 0.0719433032 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
4 Hb_002235_260 0.0722571548 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
5 Hb_001921_040 0.0726808456 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
6 Hb_006909_050 0.0762399101 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
7 Hb_001677_070 0.0821563056 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
8 Hb_008165_010 0.0829486081 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
9 Hb_000023_030 0.0831386298 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
10 Hb_018663_010 0.0853277664 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
11 Hb_000436_110 0.0854571245 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
12 Hb_002045_020 0.0874546275 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
13 Hb_000563_110 0.0944621788 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
14 Hb_001926_010 0.0956700415 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
15 Hb_088118_010 0.0981887966 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000375_200 0.0987328168 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_012368_040 0.1003179436 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003464_040 0.1016417934 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_052530_010 0.1018494393 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
20 Hb_000175_110 0.1022718216 - - hypothetical protein JCGZ_06125 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_180 Hb_000243_180 Hb_003226_040 Hb_003226_040 Hb_000243_180--Hb_003226_040 Hb_004117_060 Hb_004117_060 Hb_000243_180--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_000243_180--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_000243_180--Hb_001921_040 Hb_006909_050 Hb_006909_050 Hb_000243_180--Hb_006909_050 Hb_001677_070 Hb_001677_070 Hb_000243_180--Hb_001677_070 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_003226_040--Hb_004117_060 Hb_004117_060--Hb_002235_260 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_004117_060--Hb_008165_010 Hb_004117_060--Hb_002045_020 Hb_019762_030 Hb_019762_030 Hb_004117_060--Hb_019762_030 Hb_002235_260--Hb_001921_040 Hb_002235_260--Hb_019762_030 Hb_002235_260--Hb_008165_010 Hb_002235_260--Hb_000023_030 Hb_005198_010 Hb_005198_010 Hb_002235_260--Hb_005198_010 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_001921_040--Hb_005198_010 Hb_001921_040--Hb_003226_040 Hb_177533_010 Hb_177533_010 Hb_006909_050--Hb_177533_010 Hb_006909_050--Hb_002045_020 Hb_006909_050--Hb_000023_030 Hb_007558_060 Hb_007558_060 Hb_006909_050--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_006909_050--Hb_000731_030 Hb_000175_110 Hb_000175_110 Hb_001677_070--Hb_000175_110 Hb_000563_110 Hb_000563_110 Hb_001677_070--Hb_000563_110 Hb_001677_070--Hb_004117_060 Hb_001677_070--Hb_001921_040 Hb_001677_070--Hb_000023_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.200606 78.7971 10.7934 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.45408 0.0473536 0.342472 8.54133

CAGE analysis