Hb_000243_240

Information

Type -
Description -
Location Contig243: 219816-221484
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11950g
description cytochrome P450 family protein
nr
ID XP_006383141.1
description cytochrome P450 family protein [Populus trichocarpa]
swissprot
ID Q42600
description Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=1 SV=1
trembl
ID B9MXJ3
description Cytochrome P450 family protein OS=Populus trichocarpa GN=POPTR_0005s11950g PE=4 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25379: 219786-220611
cDNA
(Sanger)
(ID:Location)		 013_D02.ab1: 219786-220600 , 024_E15.ab1: 219788-220408 , 037_L24.ab1: 219786-220611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_240 0.0 - - cytochrome P450 family protein [Populus trichocarpa]
2 Hb_001157_120 0.0440107164 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
3 Hb_000816_170 0.0687788415 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
4 Hb_000244_290 0.0688468695 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
5 Hb_001141_430 0.0743948433 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
6 Hb_001343_060 0.0757901411 - - Cytochrome P450 [Theobroma cacao]
7 Hb_011344_110 0.0766059678 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
8 Hb_003528_090 0.0801555178 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
9 Hb_159791_010 0.086846259 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
10 Hb_003060_020 0.0913108117 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_001232_170 0.0932629094 - - sulfate transporter, putative [Ricinus communis]
12 Hb_000628_070 0.0961005548 - - -
13 Hb_000327_350 0.0966641148 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_000816_090 0.0972235751 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
15 Hb_000358_070 0.0990311558 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
16 Hb_000291_240 0.0993180922 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
17 Hb_014881_020 0.1000395712 - - Protein P21, putative [Ricinus communis]
18 Hb_004757_010 0.1002607953 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
19 Hb_000012_340 0.1022232997 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
20 Hb_005396_020 0.102345174 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_000243_240 Hb_000243_240 Hb_001157_120 Hb_001157_120 Hb_000243_240--Hb_001157_120 Hb_000816_170 Hb_000816_170 Hb_000243_240--Hb_000816_170 Hb_000244_290 Hb_000244_290 Hb_000243_240--Hb_000244_290 Hb_001141_430 Hb_001141_430 Hb_000243_240--Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_000243_240--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_000243_240--Hb_011344_110 Hb_003528_090 Hb_003528_090 Hb_001157_120--Hb_003528_090 Hb_003060_020 Hb_003060_020 Hb_001157_120--Hb_003060_020 Hb_001157_120--Hb_000816_170 Hb_005396_020 Hb_005396_020 Hb_001157_120--Hb_005396_020 Hb_001157_120--Hb_000244_290 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_000244_290--Hb_011344_110 Hb_000628_070 Hb_000628_070 Hb_000244_290--Hb_000628_070 Hb_000327_350 Hb_000327_350 Hb_000244_290--Hb_000327_350 Hb_000816_090 Hb_000816_090 Hb_000244_290--Hb_000816_090 Hb_001141_430--Hb_001343_060 Hb_159791_010 Hb_159791_010 Hb_001141_430--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001141_430--Hb_004757_010 Hb_001141_430--Hb_011344_110 Hb_001141_430--Hb_000816_170 Hb_001712_010 Hb_001712_010 Hb_001141_430--Hb_001712_010 Hb_001343_060--Hb_159791_010 Hb_001343_060--Hb_004757_010 Hb_001343_060--Hb_011344_110 Hb_001269_430 Hb_001269_430 Hb_001343_060--Hb_001269_430 Hb_011344_110--Hb_000628_070 Hb_014881_020 Hb_014881_020 Hb_011344_110--Hb_014881_020 Hb_011344_110--Hb_001232_170 Hb_006018_020 Hb_006018_020 Hb_011344_110--Hb_006018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0582855 17.3477 7.5587 418.815 0.246618 0.121079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0762022 0.029972 0 9.29622 37.3233

CAGE analysis