Hb_000243_250

Information

Type transcription factor
Description TF Family: C3H
Location Contig243: 226781-239942
Sequence    

Annotation

kegg
ID rcu:RCOM_0172980
description nuclear receptor binding set domain containing protein 1, nsd, putative
nr
ID XP_012065289.1
description PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
swissprot
ID Q9SD34
description Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3
trembl
ID A0A067LE48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger ccch domain-containing protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25381: 226949-231086 , PASA_asmbl_25382: 226786-231100 , PASA_asmbl_25383: 231475-239540
cDNA
(Sanger)
(ID:Location)		 022_G02.ab1: 227259-231100 , 039_M07.ab1: 228825-231086

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_250 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
2 Hb_002872_040 0.0425136571 - - pumilio, putative [Ricinus communis]
3 Hb_002798_070 0.0579273057 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_012779_090 0.0594149133 - - PREDICTED: lipase member N [Jatropha curcas]
5 Hb_011491_010 0.0623178618 - - Protein YME1, putative [Ricinus communis]
6 Hb_012055_060 0.0658309481 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
7 Hb_000092_020 0.0708897952 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
8 Hb_001828_130 0.0732940437 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
9 Hb_162275_050 0.0737221094 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
10 Hb_000803_070 0.0738259669 - - PREDICTED: protein TRAUCO [Jatropha curcas]
11 Hb_000003_190 0.0748207281 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
12 Hb_007163_120 0.0758078263 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
13 Hb_002043_140 0.0765238692 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000442_010 0.0772003237 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
15 Hb_000395_130 0.0772483958 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
16 Hb_000861_080 0.0778186947 - - PREDICTED: protein ELC-like [Jatropha curcas]
17 Hb_007765_110 0.0778358112 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
18 Hb_001005_190 0.0780400499 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
19 Hb_002890_290 0.0783774641 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
20 Hb_001080_230 0.0796928175 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_250 Hb_000243_250 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_002798_070 Hb_002798_070 Hb_000243_250--Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_000243_250--Hb_012779_090 Hb_011491_010 Hb_011491_010 Hb_000243_250--Hb_011491_010 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000092_020 Hb_000092_020 Hb_000243_250--Hb_000092_020 Hb_000003_190 Hb_000003_190 Hb_002872_040--Hb_000003_190 Hb_001080_230 Hb_001080_230 Hb_002872_040--Hb_001080_230 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_000574_540 Hb_000574_540 Hb_002872_040--Hb_000574_540 Hb_002798_070--Hb_012779_090 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_012779_090--Hb_162275_050 Hb_012194_030 Hb_012194_030 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_001410_020 Hb_001410_020 Hb_012779_090--Hb_001410_020 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_012055_060--Hb_001005_190 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090 Hb_000092_020--Hb_000395_130 Hb_000092_020--Hb_001080_230 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000092_020--Hb_000574_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4525 31.2489 13.0903 11.3575 19.4449 13.2672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0314 15.072 17.849 13.7053 14.6866

CAGE analysis