Hb_000243_290

Information

Type -
Description -
Location Contig243: 261428-263352
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13800g
description POPTRDRAFT_802978; plastidic aldolase family protein
nr
ID XP_002310291.1
description plastidic aldolase family protein [Populus trichocarpa]
swissprot
ID Q944G9
description Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2
trembl
ID B9HFI4
description Fructose-bisphosphate aldolase OS=Populus trichocarpa GN=POPTR_0007s13800g PE=3 SV=1
Gene Ontology
ID GO:0004332
description fructose-bisphosphate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25390: 261495-262506 , PASA_asmbl_25391: 262668-263752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_290 0.0 - - plastidic aldolase family protein [Populus trichocarpa]
2 Hb_059318_010 0.0956107633 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_111997_010 0.0968915804 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
4 Hb_074966_010 0.1060134037 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_032731_010 0.1070942316 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
6 Hb_002030_020 0.1072892659 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
7 Hb_001352_030 0.1083098302 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
8 Hb_018134_010 0.1096154584 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
9 Hb_001926_070 0.1129807978 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
10 Hb_003531_050 0.1148138894 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
11 Hb_001606_010 0.1148773044 - - kinase, putative [Ricinus communis]
12 Hb_000836_090 0.1156453316 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
13 Hb_000890_170 0.1171572857 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
14 Hb_008019_010 0.1175190005 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
15 Hb_005890_010 0.11787041 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
16 Hb_000343_050 0.1201942249 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033006_020 0.1216159803 - - Aspartate aminotransferase, putative [Ricinus communis]
18 Hb_001926_020 0.1231452622 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
19 Hb_000645_260 0.1245596527 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
20 Hb_003777_120 0.1245873838 - - -

Gene co-expression network

sample Hb_000243_290 Hb_000243_290 Hb_059318_010 Hb_059318_010 Hb_000243_290--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_000243_290--Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_000243_290--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_000243_290--Hb_032731_010 Hb_002030_020 Hb_002030_020 Hb_000243_290--Hb_002030_020 Hb_001352_030 Hb_001352_030 Hb_000243_290--Hb_001352_030 Hb_059318_010--Hb_074966_010 Hb_059318_010--Hb_032731_010 Hb_001926_020 Hb_001926_020 Hb_059318_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_111997_010--Hb_074966_010 Hb_006188_020 Hb_006188_020 Hb_111997_010--Hb_006188_020 Hb_001677_170 Hb_001677_170 Hb_111997_010--Hb_001677_170 Hb_001606_010 Hb_001606_010 Hb_111997_010--Hb_001606_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070 Hb_074966_010--Hb_001926_020 Hb_074966_010--Hb_003777_120 Hb_074966_010--Hb_032731_010 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050 Hb_032731_010--Hb_001926_020 Hb_032731_010--Hb_001926_070 Hb_032731_010--Hb_003777_120 Hb_032731_010--Hb_001606_010 Hb_101133_040 Hb_101133_040 Hb_002030_020--Hb_101133_040 Hb_000343_050 Hb_000343_050 Hb_002030_020--Hb_000343_050 Hb_002477_200 Hb_002477_200 Hb_002030_020--Hb_002477_200 Hb_002030_020--Hb_074966_010 Hb_005890_010 Hb_005890_010 Hb_002030_020--Hb_005890_010 Hb_003531_050 Hb_003531_050 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_010534_040 Hb_010534_040 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_002890_160 Hb_002890_160 Hb_001352_030--Hb_002890_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0255925 2.51751 6.89071 3.04493 0.0192027 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140643 0.110621 0 0.207299 3.63657

CAGE analysis