Hb_000243_300

Information

Type -
Description -
Location Contig243: 264021-270902
Sequence    

Annotation

kegg
ID rcu:RCOM_0291690
description catalytic, putative (EC:3.4.16.2)
nr
ID XP_002531509.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q1PF50
description Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2
trembl
ID B9SZU0
description Catalytic, putative OS=Ricinus communis GN=RCOM_0291690 PE=4 SV=1
Gene Ontology
ID GO:0004180
description probable serine protease eda2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25392: 264060-270832 , PASA_asmbl_25393: 264060-270830 , PASA_asmbl_25395: 264060-270832 , PASA_asmbl_25396: 264060-270830
cDNA
(Sanger)
(ID:Location)		 026_M14.ab1: 268689-270830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_300 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_141069_010 0.0615399864 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001085_110 0.0688661738 - - T6D22.2 [Arabidopsis thaliana]
4 Hb_004109_370 0.0721908651 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_009252_050 0.0748532404 - - protein binding protein, putative [Ricinus communis]
6 Hb_188063_050 0.0806437958 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_039946_050 0.0816639172 - - catalytic, putative [Ricinus communis]
8 Hb_008948_140 0.0819108457 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
9 Hb_001258_110 0.0830734261 - - transporter, putative [Ricinus communis]
10 Hb_015026_130 0.0832674152 - - quinone oxidoreductase, putative [Ricinus communis]
11 Hb_002259_080 0.0833676668 - - protein transport protein sec23, putative [Ricinus communis]
12 Hb_000635_030 0.0837194921 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
13 Hb_007747_170 0.0858508112 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
14 Hb_012286_040 0.0860338133 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
15 Hb_000001_170 0.0869760389 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000580_050 0.0904128214 - - -
17 Hb_019840_030 0.0906819054 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_007657_020 0.0917629441 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
19 Hb_000130_020 0.0919654335 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
20 Hb_000260_780 0.0921072954 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000243_300 Hb_000243_300 Hb_141069_010 Hb_141069_010 Hb_000243_300--Hb_141069_010 Hb_001085_110 Hb_001085_110 Hb_000243_300--Hb_001085_110 Hb_004109_370 Hb_004109_370 Hb_000243_300--Hb_004109_370 Hb_009252_050 Hb_009252_050 Hb_000243_300--Hb_009252_050 Hb_188063_050 Hb_188063_050 Hb_000243_300--Hb_188063_050 Hb_039946_050 Hb_039946_050 Hb_000243_300--Hb_039946_050 Hb_000635_030 Hb_000635_030 Hb_141069_010--Hb_000635_030 Hb_000258_110 Hb_000258_110 Hb_141069_010--Hb_000258_110 Hb_000130_020 Hb_000130_020 Hb_141069_010--Hb_000130_020 Hb_002259_080 Hb_002259_080 Hb_141069_010--Hb_002259_080 Hb_141069_010--Hb_039946_050 Hb_001085_110--Hb_009252_050 Hb_001085_110--Hb_004109_370 Hb_003124_160 Hb_003124_160 Hb_001085_110--Hb_003124_160 Hb_007657_020 Hb_007657_020 Hb_001085_110--Hb_007657_020 Hb_008397_010 Hb_008397_010 Hb_001085_110--Hb_008397_010 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_007137_050 Hb_007137_050 Hb_188063_050--Hb_007137_050 Hb_000320_290 Hb_000320_290 Hb_188063_050--Hb_000320_290 Hb_188063_050--Hb_000258_110 Hb_086063_020 Hb_086063_020 Hb_188063_050--Hb_086063_020 Hb_002740_090 Hb_002740_090 Hb_188063_050--Hb_002740_090 Hb_005663_110 Hb_005663_110 Hb_039946_050--Hb_005663_110 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_000099_030 Hb_000099_030 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.88507 11.2971 7.95796 12.6089 8.59403 8.66042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10071 4.37492 3.28962 14.3365 7.37018

CAGE analysis