Hb_000243_340

Information

Type -
Description -
Location Contig243: 303438-306848
Sequence    

Annotation

kegg
ID rcu:RCOM_0292060
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:1.3.1.74)
nr
ID XP_012065450.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID C0LGS2
description Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=2 SV=1
trembl
ID B9SZU5
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_0292060 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_340 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_002304_100 0.0589203901 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
3 Hb_002601_040 0.0639405919 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
4 Hb_001645_030 0.0707610973 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
5 Hb_000568_020 0.0846439397 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
6 Hb_000834_130 0.0877763729 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000339_050 0.0987712567 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
8 Hb_000086_510 0.1054006796 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_000805_270 0.1095351011 - - PREDICTED: expansin-A4 [Gossypium raimondii]
10 Hb_001247_090 0.1118642279 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
11 Hb_085829_010 0.1135001873 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
12 Hb_000334_090 0.1135360615 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
13 Hb_001769_070 0.115611848 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_027400_020 0.1162661725 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
15 Hb_002616_020 0.1194899744 - - PREDICTED: peroxidase 3 [Jatropha curcas]
16 Hb_001025_100 0.1222844568 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
17 Hb_005214_050 0.1233199206 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
18 Hb_001616_100 0.1273972356 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
19 Hb_000076_280 0.1287067968 - - PREDICTED: pectinesterase-like [Populus euphratica]
20 Hb_005916_040 0.1296372517 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]

Gene co-expression network

sample Hb_000243_340 Hb_000243_340 Hb_002304_100 Hb_002304_100 Hb_000243_340--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000243_340--Hb_002601_040 Hb_001645_030 Hb_001645_030 Hb_000243_340--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000339_050 Hb_000339_050 Hb_000243_340--Hb_000339_050 Hb_002304_100--Hb_001645_030 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_002304_100--Hb_000339_050 Hb_002304_100--Hb_002601_040 Hb_002601_040--Hb_000339_050 Hb_002601_040--Hb_001645_030 Hb_000805_270 Hb_000805_270 Hb_002601_040--Hb_000805_270 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510 Hb_024868_010 Hb_024868_010 Hb_001645_030--Hb_024868_010 Hb_001645_030--Hb_000834_130 Hb_001645_030--Hb_000568_020 Hb_000568_020--Hb_000834_130 Hb_000568_020--Hb_001247_090 Hb_005214_050 Hb_005214_050 Hb_000568_020--Hb_005214_050 Hb_004031_050 Hb_004031_050 Hb_000568_020--Hb_004031_050 Hb_000419_140 Hb_000419_140 Hb_000834_130--Hb_000419_140 Hb_000076_280 Hb_000076_280 Hb_000834_130--Hb_000076_280 Hb_000834_130--Hb_002304_100 Hb_000339_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000339_050--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000339_050--Hb_000506_050 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0263067 0.336492 1.04512 3.62361 0.00559018 0.00487714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.88058 0.29825

CAGE analysis