Hb_000243_350

Information

Type -
Description -
Location Contig243: 310213-312725
Sequence    

Annotation

kegg
ID cmo:103488024
description V-type proton ATPase 16 kDa proteolipid subunit
nr
ID XP_010523552.1
description PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
swissprot
ID Q96473
description V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1
trembl
ID C8CHS0
description V-H+-ATPase subunit c protein OS=Limonium bicolor PE=2 SV=1
Gene Ontology
ID GO:0000220
description v-type proton atpase 16 kda proteolipid subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25403: 310164-312506 , PASA_asmbl_25404: 310164-312506 , PASA_asmbl_25405: 311524-311829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_350 0.0 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
2 Hb_003305_040 0.0828734274 - - AP47/50p mRNA family protein [Populus trichocarpa]
3 Hb_002110_100 0.0923360677 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
4 Hb_005701_120 0.099305177 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
5 Hb_000197_020 0.0996918122 - - PREDICTED: protein RER1A [Jatropha curcas]
6 Hb_000252_100 0.1008603728 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_011606_020 0.1037782803 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
8 Hb_000060_050 0.1044571195 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_000069_640 0.106642928 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
10 Hb_000454_090 0.1068691398 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
11 Hb_000590_120 0.1069163616 - - dehydroascorbate reductase, putative [Ricinus communis]
12 Hb_000185_220 0.108473993 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
13 Hb_005601_040 0.1096291056 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
14 Hb_006059_010 0.109854438 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
15 Hb_000027_260 0.1101355353 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
16 Hb_043792_040 0.110522973 - - hypothetical protein, partial [Rosa rugosa]
17 Hb_013394_050 0.1105566403 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
18 Hb_000062_540 0.1109962276 - - conserved hypothetical protein [Ricinus communis]
19 Hb_066842_010 0.1110029874 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_007894_010 0.1113445687 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_350 Hb_000243_350 Hb_003305_040 Hb_003305_040 Hb_000243_350--Hb_003305_040 Hb_002110_100 Hb_002110_100 Hb_000243_350--Hb_002110_100 Hb_005701_120 Hb_005701_120 Hb_000243_350--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_000243_350--Hb_000197_020 Hb_000252_100 Hb_000252_100 Hb_000243_350--Hb_000252_100 Hb_011606_020 Hb_011606_020 Hb_000243_350--Hb_011606_020 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_003305_040--Hb_000252_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002110_100--Hb_005701_120 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000116_130 Hb_000116_130 Hb_011606_020--Hb_000116_130 Hb_000107_430 Hb_000107_430 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8915 21.3686 32.7329 69.9106 15.7129 17.5769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5598 21.051 44.9941 29.5615 42.0994

CAGE analysis