Hb_000243_380

Information

Type -
Description -
Location Contig243: 339817-341203
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11860g
description HISTONE H1-3 family protein
nr
ID XP_012065526.1
description PREDICTED: histone H1 [Jatropha curcas]
swissprot
ID P40267
description Histone H1 OS=Solanum pennellii PE=2 SV=1
trembl
ID A0A067LEC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06500 PE=3 SV=1
Gene Ontology
ID GO:0005694
description histone h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25411: 339642-340941
cDNA
(Sanger)
(ID:Location)		 017_G07.ab1: 340077-340941 , 024_K18.ab1: 340138-340945 , 030_N03.ab1: 340183-340941 , 041_E20.ab1: 340080-340941

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_380 0.0 - - PREDICTED: histone H1 [Jatropha curcas]
2 Hb_001511_110 0.0894102017 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
3 Hb_000340_110 0.0916149315 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_029223_050 0.0952326742 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
5 Hb_001053_030 0.1039976265 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_002745_010 0.1084500307 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
7 Hb_144824_010 0.1089742443 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
8 Hb_124677_060 0.1105787531 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_010921_030 0.1144590067 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
10 Hb_001348_150 0.1144653655 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
11 Hb_000140_070 0.1166407776 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
12 Hb_012226_010 0.121902976 - - PREDICTED: protein DGCR14 [Jatropha curcas]
13 Hb_164010_070 0.1235605689 - - Paramyosin, putative [Ricinus communis]
14 Hb_003206_030 0.1247716354 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
15 Hb_000322_150 0.1261270377 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
16 Hb_000236_220 0.1267111722 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
17 Hb_000390_100 0.1270783878 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
18 Hb_000925_160 0.127409916 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
19 Hb_076693_020 0.1276651837 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
20 Hb_000832_320 0.1283177887 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000243_380 Hb_000243_380 Hb_001511_110 Hb_001511_110 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010 Hb_001511_110--Hb_029223_050 Hb_001511_110--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_000340_110--Hb_029223_050 Hb_000340_110--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_000340_110--Hb_144824_010 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_124677_060 Hb_124677_060 Hb_001053_030--Hb_124677_060 Hb_001053_030--Hb_000340_110 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_001053_030--Hb_144824_010 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_144824_010--Hb_000832_320 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
415.464 905.967 115.201 119.62 343.723 267.375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
255.212 231.669 158.184 260.639 133.285

CAGE analysis