Hb_000244_160

Information

Type -
Description -
Location Contig244: 201040-202527
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06190g
description POPTRDRAFT_759955; hypothetical protein
nr
ID XP_012087643.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LZ19
description Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
trembl
ID A0A067JPQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25465: 199144-200351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
2 Hb_027450_010 0.0802486472 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
3 Hb_034271_030 0.0912567915 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
4 Hb_000723_260 0.0994093527 - - ethylene insensitive protein, putative [Ricinus communis]
5 Hb_010417_050 0.0994625719 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
6 Hb_000577_010 0.100562457 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
7 Hb_000707_050 0.104815231 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_000193_310 0.1050048506 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
9 Hb_000386_030 0.1073978296 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
10 Hb_004137_060 0.1093222899 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
11 Hb_004452_010 0.1105885094 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
12 Hb_000832_020 0.1112182961 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
13 Hb_012656_030 0.1138042769 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
14 Hb_000538_200 0.1138563075 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
15 Hb_002150_030 0.114750967 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
16 Hb_001019_060 0.1155741354 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
17 Hb_001507_020 0.1165697737 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
18 Hb_008500_010 0.116882171 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
19 Hb_002678_020 0.117160928 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
20 Hb_002986_130 0.117918964 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000244_160 Hb_000244_160 Hb_027450_010 Hb_027450_010 Hb_000244_160--Hb_027450_010 Hb_034271_030 Hb_034271_030 Hb_000244_160--Hb_034271_030 Hb_000723_260 Hb_000723_260 Hb_000244_160--Hb_000723_260 Hb_010417_050 Hb_010417_050 Hb_000244_160--Hb_010417_050 Hb_000577_010 Hb_000577_010 Hb_000244_160--Hb_000577_010 Hb_000707_050 Hb_000707_050 Hb_000244_160--Hb_000707_050 Hb_027450_010--Hb_034271_030 Hb_001019_060 Hb_001019_060 Hb_027450_010--Hb_001019_060 Hb_000538_200 Hb_000538_200 Hb_027450_010--Hb_000538_200 Hb_002678_020 Hb_002678_020 Hb_027450_010--Hb_002678_020 Hb_001258_040 Hb_001258_040 Hb_027450_010--Hb_001258_040 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_034271_030--Hb_000723_260 Hb_000152_820 Hb_000152_820 Hb_000723_260--Hb_000152_820 Hb_000723_260--Hb_000538_200 Hb_002150_030 Hb_002150_030 Hb_000723_260--Hb_002150_030 Hb_000317_020 Hb_000317_020 Hb_000723_260--Hb_000317_020 Hb_007586_030 Hb_007586_030 Hb_000723_260--Hb_007586_030 Hb_007757_110 Hb_007757_110 Hb_000723_260--Hb_007757_110 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_014267_010 Hb_014267_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_007163_090 Hb_007163_090 Hb_000577_010--Hb_007163_090 Hb_004724_060 Hb_004724_060 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_001797_050 Hb_001797_050 Hb_000577_010--Hb_001797_050 Hb_000739_310 Hb_000739_310 Hb_000707_050--Hb_000739_310 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_000832_020 Hb_000832_020 Hb_000707_050--Hb_000832_020 Hb_006711_100 Hb_006711_100 Hb_000707_050--Hb_006711_100 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00026 1.24729 0.308794 0.528059 2.05506 2.67087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.91406 1.48782 2.42185 1.40567 1.45205

CAGE analysis