Hb_000244_170

Information

Type -
Description -
Location Contig244: 203828-204769
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06200g
description hydroxyproline-rich glycoprotein
nr
ID XP_012087628.1
description PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25405 PE=4 SV=1
Gene Ontology
ID GO:0005199
description hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25467: 203686-203912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_170 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
2 Hb_003244_020 0.0786935136 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
3 Hb_000062_330 0.0859389627 - - unknown [Lotus japonicus]
4 Hb_013394_050 0.0883685444 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
5 Hb_007894_010 0.0971995184 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
6 Hb_002184_090 0.0998072584 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000197_020 0.1033420221 - - PREDICTED: protein RER1A [Jatropha curcas]
8 Hb_000127_140 0.1053737672 - - transporter-related family protein [Populus trichocarpa]
9 Hb_000742_020 0.1102923907 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_010407_140 0.1112405011 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
11 Hb_000765_060 0.111389477 - - Alcohol dehydrogenase-like 6 [Glycine soja]
12 Hb_000181_350 0.1124827786 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
13 Hb_010368_050 0.1203484633 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_004088_040 0.1213403966 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
15 Hb_000392_340 0.1247452946 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
16 Hb_019181_030 0.1250651012 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
17 Hb_007101_110 0.125941946 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
18 Hb_000069_640 0.1282246885 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
19 Hb_001195_060 0.1283284052 - - Protein yrdA, putative [Ricinus communis]
20 Hb_000854_040 0.129210635 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000244_170 Hb_000244_170 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_000127_140 Hb_000127_140 Hb_003244_020--Hb_000127_140 Hb_003244_020--Hb_007894_010 Hb_003244_020--Hb_002184_090 Hb_166574_010 Hb_166574_010 Hb_003244_020--Hb_166574_010 Hb_003244_020--Hb_013394_050 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_000069_640 Hb_000069_640 Hb_013394_050--Hb_000069_640 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_013394_050--Hb_000197_020 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120 Hb_010407_140 Hb_010407_140 Hb_007894_010--Hb_010407_140 Hb_007894_010--Hb_000127_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_007894_010--Hb_000197_020 Hb_000136_100 Hb_000136_100 Hb_007894_010--Hb_000136_100 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_002184_090--Hb_001195_060 Hb_002184_090--Hb_000127_140 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_008147_090 Hb_008147_090 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.751213 0.557851 3.0566 4.37636 0.728819 0.996231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58403 1.41759 2.51982 1.17649 1.48729

CAGE analysis