Hb_000244_220

Information

Type -
Description -
Location Contig244: 231006-251263
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10040g
description POPTRDRAFT_780515; aspartate kinase family protein
nr
ID XP_012077016.1
description PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O81852
description Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1
trembl
ID A0A067LED5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17215 PE=4 SV=1
Gene Ontology
ID GO:0004072
description bifunctional aspartokinase homoserine dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25471: 230987-251785 , PASA_asmbl_25472: 231546-231732 , PASA_asmbl_25473: 248733-251263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_220 0.0 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000856_310 0.0638155194 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
3 Hb_004602_040 0.0682784909 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
4 Hb_000046_010 0.0717816817 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
5 Hb_001912_100 0.074047916 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
6 Hb_002163_010 0.0753890232 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
7 Hb_000327_340 0.0772973595 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
8 Hb_000318_510 0.0789973929 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
9 Hb_000487_290 0.0806884692 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
10 Hb_002400_310 0.0807434251 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
11 Hb_011218_040 0.082637905 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
12 Hb_003935_030 0.0847235675 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
13 Hb_123352_020 0.0847464365 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
14 Hb_000123_210 0.0852777679 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
15 Hb_006586_050 0.0856009538 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
16 Hb_007101_170 0.0858793846 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
17 Hb_005214_090 0.0874249871 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
18 Hb_106371_010 0.0876174265 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_000510_310 0.0878025858 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_000023_330 0.0893732873 - - RNA recognition motif-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000244_220 Hb_000244_220 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_000856_310--Hb_004602_040 Hb_005214_090 Hb_005214_090 Hb_000856_310--Hb_005214_090 Hb_000369_130 Hb_000369_130 Hb_000856_310--Hb_000369_130 Hb_017862_020 Hb_017862_020 Hb_000856_310--Hb_017862_020 Hb_000739_100 Hb_000739_100 Hb_000856_310--Hb_000739_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_001718_090 Hb_001718_090 Hb_000046_010--Hb_001718_090 Hb_000441_070 Hb_000441_070 Hb_000046_010--Hb_000441_070 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_000030_040 Hb_000030_040 Hb_001912_100--Hb_000030_040 Hb_001912_100--Hb_000046_010 Hb_003935_030 Hb_003935_030 Hb_001912_100--Hb_003935_030 Hb_000487_290 Hb_000487_290 Hb_001912_100--Hb_000487_290 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_031042_070 Hb_031042_070 Hb_002163_010--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_002163_010--Hb_001633_040 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_000616_020 Hb_000616_020 Hb_000327_340--Hb_000616_020 Hb_000270_760 Hb_000270_760 Hb_000327_340--Hb_000270_760 Hb_001268_350 Hb_001268_350 Hb_000327_340--Hb_001268_350 Hb_005699_090 Hb_005699_090 Hb_000327_340--Hb_005699_090 Hb_000343_030 Hb_000343_030 Hb_000327_340--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5699 21.0241 5.63896 9.17677 21.5532 23.3314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0127 12.2166 14.302 21.7759 7.43877

CAGE analysis