Hb_000244_240

Information

Type -
Description -
Location Contig244: 257592-265877
Sequence    

Annotation

kegg
ID rcu:RCOM_0964880
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_002517789.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LFT8
description Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1
trembl
ID B9RVM0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0964880 PE=4 SV=1
Gene Ontology
ID GO:0004693
description cyclin-dependent kinase c-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25474: 257595-265785 , PASA_asmbl_25475: 260814-261312 , PASA_asmbl_25476: 259089-259280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_240 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002159_040 0.0695640609 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
3 Hb_001301_210 0.0739538172 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
4 Hb_007348_030 0.0756983817 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
5 Hb_046615_020 0.0768543899 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
6 Hb_000120_510 0.0782616599 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
7 Hb_000230_370 0.0801747471 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_011497_010 0.0808972749 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
9 Hb_002048_090 0.0818832938 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
10 Hb_005129_050 0.0836081739 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
11 Hb_001396_290 0.0858482357 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
12 Hb_003018_160 0.0885279011 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
13 Hb_006588_050 0.0894209348 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
14 Hb_008725_130 0.0900402526 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
15 Hb_004225_130 0.090181478 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
16 Hb_004143_070 0.0905173059 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004037_030 0.0909329232 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
18 Hb_000475_020 0.0917519415 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
19 Hb_000531_090 0.0930091565 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
20 Hb_000250_070 0.094571357 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]

Gene co-expression network

sample Hb_000244_240 Hb_000244_240 Hb_002159_040 Hb_002159_040 Hb_000244_240--Hb_002159_040 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000120_510 Hb_000120_510 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_005129_050 Hb_005129_050 Hb_001301_210--Hb_005129_050 Hb_001301_210--Hb_000120_510 Hb_002883_010 Hb_002883_010 Hb_001301_210--Hb_002883_010 Hb_001301_210--Hb_000230_370 Hb_001396_290 Hb_001396_290 Hb_001301_210--Hb_001396_290 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_007348_030--Hb_001301_210 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_000120_510--Hb_001396_290 Hb_006829_090 Hb_006829_090 Hb_000120_510--Hb_006829_090 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000327_310 Hb_000327_310 Hb_000230_370--Hb_000327_310 Hb_000230_370--Hb_002883_010 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.101 47.2838 27.6886 21.4888 87.3848 140.62
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.28 14.4572 28.8298 26.0629 24.5121

CAGE analysis