Hb_000244_250

Information

Type transcription factor
Description TF Family: C3H
Location Contig244: 268258-276463
Sequence    

Annotation

kegg
ID rcu:RCOM_1278130
description hypothetical protein
nr
ID XP_012087634.1
description PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
swissprot
ID Q9LIH5
description Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana GN=At3g18640 PE=2 SV=1
trembl
ID A0A067JZ23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25410 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 38-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25477: 268255-276509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_250 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
2 Hb_000005_380 0.0540649583 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
3 Hb_000915_050 0.0563128889 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007586_030 0.0592242889 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
5 Hb_022408_010 0.0603400501 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
6 Hb_001541_020 0.0606060969 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
7 Hb_003362_040 0.0628262835 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
8 Hb_004055_040 0.0635947158 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_005730_030 0.0673605709 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_001797_050 0.0681375284 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
11 Hb_000107_500 0.0688976344 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
12 Hb_000661_050 0.0706553623 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
13 Hb_004452_100 0.0708432381 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
14 Hb_002798_040 0.0715948936 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
15 Hb_000390_070 0.0747400775 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
16 Hb_007757_110 0.0748949975 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_002307_100 0.0754016425 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
18 Hb_001680_010 0.0756620526 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
19 Hb_000034_050 0.0774500417 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
20 Hb_000283_070 0.0781067373 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_000244_250 Hb_000244_250 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_000005_380--Hb_007586_030 Hb_123777_030 Hb_123777_030 Hb_000005_380--Hb_123777_030 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_004055_040 Hb_004055_040 Hb_000005_380--Hb_004055_040 Hb_000915_050--Hb_003362_040 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_022408_010--Hb_001541_020 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_002221_050 Hb_002221_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_000107_500 Hb_000107_500 Hb_022408_010--Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_001541_020--Hb_002221_050 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4096 18.8399 8.08637 10.3315 32.9587 37.226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1458 12.819 28.9455 16.6683 13.6043

CAGE analysis