Hb_000244_260

Information

Type -
Description -
Location Contig244: 283867-287978
Sequence    

Annotation

kegg
ID bvg:104889823
description probable pectinesterase/pectinesterase inhibitor 51
nr
ID XP_012087640.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
swissprot
ID Q9FJ21
description Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1
trembl
ID A9NUI7
description Pectinesterase OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25480: 285564-288019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_260 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
2 Hb_002072_010 0.0905447205 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000254_070 0.1053782185 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
4 Hb_011310_050 0.1053801194 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
5 Hb_030565_110 0.1077397375 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
6 Hb_003058_200 0.1123743224 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
7 Hb_002026_070 0.1161827075 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
8 Hb_001105_130 0.1164499582 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
9 Hb_000019_170 0.1169945943 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
10 Hb_021297_020 0.1191482864 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_000167_040 0.120749168 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
12 Hb_000679_040 0.1209654005 - - Cellulose synthase 1 [Theobroma cacao]
13 Hb_010381_020 0.1226332003 - - Endosomal P24A protein precursor, putative [Ricinus communis]
14 Hb_014497_060 0.1235507332 - - phosphofructokinase, putative [Ricinus communis]
15 Hb_000494_030 0.1237589644 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
16 Hb_059741_010 0.1256232153 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
17 Hb_001210_040 0.1266853558 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
18 Hb_003371_190 0.1271196528 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
19 Hb_102763_010 0.1272467325 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
20 Hb_085187_010 0.1272923753 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_000244_260 Hb_000244_260 Hb_002072_010 Hb_002072_010 Hb_000244_260--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000244_260--Hb_000254_070 Hb_011310_050 Hb_011310_050 Hb_000244_260--Hb_011310_050 Hb_030565_110 Hb_030565_110 Hb_000244_260--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_000244_260--Hb_003058_200 Hb_002026_070 Hb_002026_070 Hb_000244_260--Hb_002026_070 Hb_002072_010--Hb_030565_110 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_000003_310 Hb_000003_310 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_000679_040 Hb_000679_040 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_011310_050--Hb_000679_040 Hb_001969_140 Hb_001969_140 Hb_011310_050--Hb_001969_140 Hb_001195_310 Hb_001195_310 Hb_011310_050--Hb_001195_310 Hb_001216_110 Hb_001216_110 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_030565_110--Hb_000003_310 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_003058_200--Hb_000674_010 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_003058_200--Hb_002851_010 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_014497_060 Hb_014497_060 Hb_002026_070--Hb_014497_060 Hb_169586_010 Hb_169586_010 Hb_002026_070--Hb_169586_010 Hb_002026_070--Hb_000019_170 Hb_000922_260 Hb_000922_260 Hb_002026_070--Hb_000922_260 Hb_002232_490 Hb_002232_490 Hb_002026_070--Hb_002232_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87877 3.83238 4.70933 11.7888 2.54254 2.97834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.829454 0.652706 2.11759 10.1691 10.2336

CAGE analysis