Hb_000244_280

Information

Type -
Description -
Location Contig244: 294700-297070
Sequence    

Annotation

kegg
ID rcu:RCOM_1460660
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012087639.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
swissprot
ID Q9LXD9
description Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1
trembl
ID A0A067JXR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25411 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25482: 295344-297084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_280 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
2 Hb_004129_050 0.1337215655 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
3 Hb_002235_190 0.1356377949 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000702_060 0.1385883335 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002301_250 0.1442187153 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
6 Hb_006717_070 0.1537674887 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
7 Hb_003607_060 0.1573362767 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
8 Hb_003626_050 0.1592011151 - - malic enzyme, putative [Ricinus communis]
9 Hb_000363_410 0.1635849509 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
10 Hb_012545_090 0.1660861276 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
11 Hb_033772_070 0.1663937822 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
12 Hb_001123_220 0.1664485343 - - -
13 Hb_003227_010 0.1669492512 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
14 Hb_010872_040 0.1673332454 - - hypothetical protein F775_31993 [Aegilops tauschii]
15 Hb_000227_040 0.1692176971 - - Stem-specific protein TSJT1, putative [Ricinus communis]
16 Hb_001900_060 0.1704738813 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
17 Hb_000347_110 0.1708186703 - - BnaA05g25330D [Brassica napus]
18 Hb_002213_090 0.1719728652 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
19 Hb_000235_050 0.172645414 - - conserved hypothetical protein [Ricinus communis]
20 Hb_127886_010 0.1732717844 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000244_280 Hb_000244_280 Hb_004129_050 Hb_004129_050 Hb_000244_280--Hb_004129_050 Hb_002235_190 Hb_002235_190 Hb_000244_280--Hb_002235_190 Hb_000702_060 Hb_000702_060 Hb_000244_280--Hb_000702_060 Hb_002301_250 Hb_002301_250 Hb_000244_280--Hb_002301_250 Hb_006717_070 Hb_006717_070 Hb_000244_280--Hb_006717_070 Hb_003607_060 Hb_003607_060 Hb_000244_280--Hb_003607_060 Hb_000041_060 Hb_000041_060 Hb_004129_050--Hb_000041_060 Hb_009732_020 Hb_009732_020 Hb_004129_050--Hb_009732_020 Hb_004129_050--Hb_006717_070 Hb_003626_050 Hb_003626_050 Hb_004129_050--Hb_003626_050 Hb_012545_090 Hb_012545_090 Hb_004129_050--Hb_012545_090 Hb_000401_010 Hb_000401_010 Hb_002235_190--Hb_000401_010 Hb_000363_410 Hb_000363_410 Hb_002235_190--Hb_000363_410 Hb_001488_280 Hb_001488_280 Hb_002235_190--Hb_001488_280 Hb_002093_050 Hb_002093_050 Hb_002235_190--Hb_002093_050 Hb_000823_010 Hb_000823_010 Hb_002235_190--Hb_000823_010 Hb_000684_360 Hb_000684_360 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_132101_010 Hb_132101_010 Hb_002301_250--Hb_132101_010 Hb_002301_250--Hb_000702_060 Hb_000803_120 Hb_000803_120 Hb_002301_250--Hb_000803_120 Hb_003227_010 Hb_003227_010 Hb_002301_250--Hb_003227_010 Hb_002301_250--Hb_003626_050 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_006717_070--Hb_009732_020 Hb_003626_040 Hb_003626_040 Hb_006717_070--Hb_003626_040 Hb_000395_220 Hb_000395_220 Hb_006717_070--Hb_000395_220 Hb_000362_110 Hb_000362_110 Hb_006717_070--Hb_000362_110 Hb_003813_120 Hb_003813_120 Hb_006717_070--Hb_003813_120 Hb_003607_060--Hb_005181_180 Hb_003607_060--Hb_000702_060 Hb_001341_200 Hb_001341_200 Hb_003607_060--Hb_001341_200 Hb_000139_140 Hb_000139_140 Hb_003607_060--Hb_000139_140 Hb_000009_140 Hb_000009_140 Hb_003607_060--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_003607_060--Hb_004586_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5974 23.3505 29.6184 37.423 7.10598 13.0572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33571 3.58209 6.66977 83.5443 11.7281

CAGE analysis